View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_44 (Length: 239)
Name: NF8020_low_44
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2874423 - 2874591
Alignment:
| Q |
1 |
atatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874423 |
atatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
2874522 |
T |
|
| Q |
101 |
ggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2874523 |
ggaaaggaagtatcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
2874591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2889097 - 2889265
Alignment:
| Q |
1 |
atatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
100 |
Q |
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||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
2889097 |
atatttatttgcccgttcataatctttcaattccatcaagcacgatgtattgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcg |
2889196 |
T |
|
| Q |
101 |
ggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
169 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2889197 |
ggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
2889265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 3145765 - 3145597
Alignment:
| Q |
1 |
atatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
100 |
Q |
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||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3145765 |
atatttatttgcccgttcataatctttcaattccatcaagcagcatgcattgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcg |
3145666 |
T |
|
| Q |
101 |
ggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
169 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
3145665 |
ggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
3145597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 3160632 - 3160464
Alignment:
| Q |
1 |
atatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
100 |
Q |
| |
|
||||||||||| | |||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||| |
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| T |
3160632 |
atatttatttgcctgttcataatctttcaattttatcaagcacgatgcattgctcagattacaagaagacctcaacccaacaatttccttatcctcatcg |
3160533 |
T |
|
| Q |
101 |
ggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |
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|
| T |
3160532 |
ggaaaggaagtatcatactttataaacttcagagcctgtattacggtttcagtttcagaaaagatacct |
3160464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2797698 - 2797533
Alignment:
| Q |
1 |
atatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |
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| T |
2797698 |
atatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcg |
2797599 |
T |
|
| Q |
101 |
ggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagata |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
2797598 |
ggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagata |
2797533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 2848723 - 2848878
Alignment:
| Q |
13 |
ccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagta |
112 |
Q |
| |
|
|||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2848723 |
ccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagta |
2848822 |
T |
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| Q |
113 |
tcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacc |
168 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |
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| T |
2848823 |
tcatactttataaagttcagagcctgcattacggtttcagtttcagaaaagatacc |
2848878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 2874711 - 2874767
Alignment:
| Q |
167 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaataat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
2874711 |
cctaaagagagcactatgctcataactagcgaagctctagtaaccaactctaataat |
2874767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 2889387 - 2889439
Alignment:
| Q |
167 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaa |
219 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2889387 |
cctaaagagagcactatgctcctaactagagaaactctagtaaccaactctaa |
2889439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 3145475 - 3145423
Alignment:
| Q |
167 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaa |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3145475 |
cctaaagagagcactatgctcctaactagagaaactctagtaaccaactctaa |
3145423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 3160342 - 3160284
Alignment:
| Q |
167 |
cctaaagagagcactatgctcataact--agagaaactctagtaaccaactctaataat |
223 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
3160342 |
cctaaagagagcactatgctcctaactagagagaaactctagtaaccaactccaataat |
3160284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 2797417 - 2797370
Alignment:
| Q |
178 |
cactatgctcataactagaga--aactctagtaaccaactctaataat |
223 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||| ||||||||| |
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| T |
2797417 |
cactatgctcctaactagagagaaactctagtaaccaaatctaataat |
2797370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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