View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_47 (Length: 229)
Name: NF8020_low_47
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 25001977 - 25001767
Alignment:
| Q |
1 |
aataatattttggagcacaaaagctacaaaagnnnnnnntagatatataagctagcttctaatgaaatgatgaaatacataccattggaccaaggggctt |
100 |
Q |
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||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25001977 |
aataatattttggagcacaaaagctacgaatgaaaaaaattgatatataagctagcttctaatgaaatgatgaaatacataccattggaccaaggggctt |
25001878 |
T |
|
| Q |
101 |
gccattatgttcaactgtcatagnnnnnnnttaataaatcatgcttagatatcaatttcagaatatgaacttaattaacatctgtaagcatataattaac |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25001877 |
gccattatgttcaactgtcatagaaaaaaattaataaatcatgcttagatataaatttcagaatatgaacttaattaacatctgtaagcatataattaac |
25001778 |
T |
|
| Q |
201 |
ttgacaattac |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
25001777 |
ttgacaattac |
25001767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 24985043 - 24985143
Alignment:
| Q |
5 |
atattttggagcacaaaagctacaaaagnnnnnnntagatatataagctagcttctaatgaaatgatgaaatacataccattggaccaaggggcttgcca |
104 |
Q |
| |
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|||||||||| ||||||||||||||| | | ||||| ||| ||| | ||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24985043 |
atattttggaccacaaaagctacaaatgagaagcattgatatgcaagttagatgctaatgaaatgataaaatatataccattggaccaaggggcttgcca |
24985142 |
T |
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| Q |
105 |
t |
105 |
Q |
| |
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| |
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|
| T |
24985143 |
t |
24985143 |
T |
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