View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8020_low_48 (Length: 222)
Name: NF8020_low_48
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_48 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 3058683 - 3058867
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058683 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
3058782 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058783 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
3058867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 17443517 - 17443333
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443517 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
17443418 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443417 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
17443333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 4873326 - 4873510
Alignment:
| Q |
17 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873326 |
aatattacccttccagcacctcctgtatttacaggaaagaaatatgaaatctggtctgtgaagatgaagactcatttgagggcatatgatctttgggaag |
4873425 |
T |
|
| Q |
117 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873426 |
tggtggaaacagctgctgaaccaccacctttgcaagaaaatccaactgttgctcaaatgagataccacagtgagcaagttgccaa |
4873510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University