View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_5 (Length: 627)
Name: NF8020_low_5
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 8131744 - 8131360
Alignment:
| Q |
1 |
tagtactactactaatgttgagtttcaacttggtagtggttcttcttcaattggtaatggtaatggtggctctttgttgatatcaaatggcattggtgaa |
100 |
Q |
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| T |
8131744 |
tagtactactactaatgttgagtttcaacttggtagtggttcttcttcaattggtaatggtaatggtggctctttgttgatatcaaatggcattggtgaa |
8131645 |
T |
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| Q |
101 |
caatggaggtttccaaattcgttacaaattcatcagcagcaacaatatcaacaattccctttcttgagtaatttgcaaccacaaattggactatttcaat |
200 |
Q |
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| T |
8131644 |
caatggaggtttccaaattcgctacaaattcatcagcagcaacaatatcaacaattccctttcttgagtaatttgcaaccacaaattggactatttcaat |
8131545 |
T |
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| Q |
201 |
ttggtggagagaacaatggtgaaccacaaagaaatttgtttcgttcgaaggaaacgtattcttcaagtgttagtattggaatgatgcctcaagttaatac |
300 |
Q |
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| T |
8131544 |
ttggtggagagaacaatggtgaaccacaaagaaatttgtttcgttctaaggaaacatattcttcaagtgttagtattggaatgatgcctcaagttaatac |
8131445 |
T |
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| Q |
301 |
agttaaagtggaagaaaacaatcatcaaggtttgagtttgccaaaaaatctcttgagtggttcaggaaatagtaatgatctattt |
385 |
Q |
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| T |
8131444 |
agttaaagtggaagaaaacaatcatcaaggtttgagtttgccaaaaaatctcttgagtggttcaggaaatagtaatgatctattt |
8131360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 434 - 608
Target Start/End: Complemental strand, 8131323 - 8131158
Alignment:
| Q |
434 |
gttcctagtttcacttcaccaccttgtgattctcaaatctagtgcttttggttccttaattaatggagcatcatatttttatgatcatatatagaaatga |
533 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8131323 |
gttcctagtttcactccaccaccttgtgatcctcaaatctagtgcttttggttccttaattaat----------atttttatgatcatatatagaaatga |
8131234 |
T |
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| Q |
534 |
tccaaggtataattagagt-gttaggttcattagttcactttctaactatggaatattatgaaattccaccattag |
608 |
Q |
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|| |||||||||||||||| | | || |||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
8131233 |
tcaaaggtataattagagtaggttcattaattagttcacttgctaactatggaatattatgaaatttcaccattag |
8131158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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