View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_52 (Length: 211)
Name: NF8020_low_52
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 32996882 - 32996678
Alignment:
| Q |
1 |
gcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattcttcttctcacgtgcatcaaatatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32996882 |
gcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattatattcttcttcttctcacgtgcatcaaatatgaa |
32996783 |
T |
|
| Q |
101 |
aaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactcttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32996782 |
aaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaatactcagtttccaacaaagaacatcaactcttctt |
32996683 |
T |
|
| Q |
201 |
ctctg |
205 |
Q |
| |
|
||||| |
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|
| T |
32996682 |
ctctg |
32996678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 24741714 - 24741513
Alignment:
| Q |
1 |
gcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattcttcttctcacgtgcatcaaatatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
24741714 |
gcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttcttcttctcacgtacatcaaatatgaa |
24741615 |
T |
|
| Q |
101 |
aaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactcttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
24741614 |
aaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttccaacaaagaacatcaactattctt |
24741515 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
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|
| T |
24741514 |
ct |
24741513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 24549742 - 24549639
Alignment:
| Q |
103 |
aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactcttc |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| | |||||||||| ||||| ||||||||||| ||||||||| ||||||||||| |
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|
| T |
24549742 |
aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactcttc |
24549643 |
T |
|
| Q |
199 |
ttct |
202 |
Q |
| |
|
|||| |
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|
| T |
24549642 |
ttct |
24549639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25876659 - 25876712
Alignment:
| Q |
1 |
gcttactactgcacctccccatttttccattacaccacaaaactgattgattaa |
54 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25876659 |
gcttactactgcacctccccatttccccattacaccacaaaactgattgattaa |
25876712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 7424473 - 7424421
Alignment:
| Q |
2 |
cttactactgcacctccccatttttccattacaccacaaaactgattgattaa |
54 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7424473 |
cttactactgcacctccccatttccgcattacaccacaaaactgattgattaa |
7424421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42544625 - 42544678
Alignment:
| Q |
1 |
gcttactactgcacctccccatttttccattacaccacaaaactgattgattaa |
54 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
42544625 |
gcttactactgcacctccccatttccccattacaccataaaactgattgattaa |
42544678 |
T |
|
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