View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_53 (Length: 211)
Name: NF8020_low_53
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_53 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 42272429 - 42272601
Alignment:
| Q |
21 |
ttggcatatatgaaaatttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatc |
120 |
Q |
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| T |
42272429 |
ttggcatatatgaaaaattaaagttggcagagaaacaattctcaaagcttgaagtgacaaaatggcatgtaattaagtagtacgggcttgtatattgatc |
42272528 |
T |
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| Q |
121 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggataaagataatt |
193 |
Q |
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| T |
42272529 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggatgaagacaatt |
42272601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 42285463 - 42285635
Alignment:
| Q |
21 |
ttggcatatatgaaaatttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatc |
120 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42285463 |
ttggcatatatgaaaatttaatgttggcagagaaacaattctcaaagcttgaagtgacaaaatcgcacgtaattaagtagtacgggcttgtatattgatc |
42285562 |
T |
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| Q |
121 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggataaagataatt |
193 |
Q |
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| T |
42285563 |
ttgataacaagtcgtgcaagaatttcccaatctatatatcttttatattttaatcaatgggatgaagacaatt |
42285635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 42259913 - 42260011
Alignment:
| Q |
36 |
atttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgt |
135 |
Q |
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| T |
42259913 |
atttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgt |
42260008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 42280475 - 42280561
Alignment:
| Q |
48 |
cagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgca |
138 |
Q |
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| T |
42280475 |
cagagaaacaatcctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgtgca |
42280561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 42313590 - 42313669
Alignment:
| Q |
48 |
cagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaag |
131 |
Q |
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| T |
42313590 |
cagagaaacaattcccaaagcatgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaag |
42313669 |
T |
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Target: scaffold0002 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 488748 - 488846
Alignment:
| Q |
36 |
atttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgt |
135 |
Q |
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| T |
488748 |
atttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgt |
488843 |
T |
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