View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_7 (Length: 603)
Name: NF8020_low_7
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 48490821 - 48491407
Alignment:
| Q |
1 |
agaacacatcttaattatgattttgatactatccaccaccaacttaaaatcaaattaaaaaattacatgatccatttctgcgacccaccccaatttcaac |
100 |
Q |
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| T |
48490821 |
agaacacatcttaattatgattttgatactatccactaccaacttaaaatcaaattaaaaaattacatgatccatttctgcgacccaccccaatttcaac |
48490920 |
T |
|
| Q |
101 |
gcaaataggagagttcaagcatttccttcatgaaccagtaggagtgtctgatgtgagtttgtcaatgcttgaacaagatgccctgaactgtccctggagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48490921 |
gcaaataggagagttcaagcatttccttcatgaaccagtaggagtgtctgatgtgagtttgtcaatgcttgaacaagatgccctgaaccgtccctggagc |
48491020 |
T |
|
| Q |
201 |
accttctatcccatggtaagggttatcaaactttgagttttctatttttggattgaaaaggatgcgtaatttaaaaacttaggcggggtttgtgcaattt |
300 |
Q |
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| T |
48491021 |
accttctatcccatggcaagggttatcaaactttgagttttctatttttggattgaaaaggatgcgtaatttaaaaacttaggcggggtttgtgcaattt |
48491120 |
T |
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| Q |
301 |
tacgaaggaactgcaacgtaattgatggtaaattaagtacacaacactgtcttctcttcacatcaaagtatctaagagtgttactcagtcgttgtcccaa |
400 |
Q |
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| T |
48491121 |
tacgaaggaactgcaacgtaattgatggtaaattaagtacacaacactgtcttctcttcacatcaaagtatctaagagtgttactcagtcgttgtcccaa |
48491220 |
T |
|
| Q |
401 |
ataaccattaacataacattgcacaaaagaaaatcaagcaataccagtctaatatttccaatacccttgttaattaaagtttctagcagcaatatgcagc |
500 |
Q |
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| T |
48491221 |
ataaccattaacatgacattgcacaaaagaaaatcaagcaataccagtctaatatttccaatacccttgttagttaaagtttctagcagcaatatgcagc |
48491320 |
T |
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| Q |
501 |
tcatatagacagcaacattgtattgtatcaaccaaagactacaagaagaaagcttctactgtcacaaactaaagcaagaagtggctg |
587 |
Q |
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| T |
48491321 |
tcatatagacagcaacattgtattgtatcaaccaaagactacaagaagaaagcttctactgtcacaaactaaagaaagaagtggctg |
48491407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 52853654 - 52853758
Alignment:
| Q |
112 |
agttcaagcatttccttcatgaaccagtaggagtgtctgatgtgagtttgtcaatgcttgaacaagatgccctgaactgtccctggagcaccttctatcc |
211 |
Q |
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| T |
52853654 |
agttcaagcatttccttcatgaatcagtaggagtatatattgtccgtttgtcaatgcttgaacaagatgccctgaactgtccctagagcacattctatcc |
52853753 |
T |
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| Q |
212 |
catgg |
216 |
Q |
| |
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||||| |
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| T |
52853754 |
catgg |
52853758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 52853574 - 52853639
Alignment:
| Q |
13 |
aattatgattttga-tactatccaccaccaacttaaaatcaaattaaaaaattacatgatccatttc |
78 |
Q |
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|||||||||||||| | |||| ||| |||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
52853574 |
aattatgattttgaatgctatacactaccaacttcaaatcaaatcaaaa-attacatgatccatttc |
52853639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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