View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8020_low_8 (Length: 579)
Name: NF8020_low_8
Description: NF8020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8020_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 45975633 - 45975073
Alignment:
| Q |
18 |
catcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatattattgaacgctagttgcaatat |
117 |
Q |
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| T |
45975633 |
catcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatatttaatcacacaaatattaatgaacgctagttgcaatat |
45975534 |
T |
|
| Q |
118 |
ggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcatttgtaaatttgattgcatcagcaatg |
217 |
Q |
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| T |
45975533 |
ggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgcaaccacatggcatttgtaaatttgattgcatcaacaatg |
45975434 |
T |
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| Q |
218 |
ttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcacaaatcacaatcgccatgtcgttgcagattttgaagtct |
317 |
Q |
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| T |
45975433 |
ttttgccgcaacataaagttcaatagttttaaaatgcagcgaaataatgcagtcaatatcacaaatcacaatcgccatgtcgttgcagattttgaagtct |
45975334 |
T |
|
| Q |
318 |
atgcatagtttaac-----------------cgcgatttaaaaccattggtgcgatggtgagacgtagttaaaaaatgaaatggttgtgcaatcttgttt |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45975333 |
atgcatagtttaaccgcgtaagagccacaaccgcgatttaaaaccattggtgcgatggtgagatgtagttaaaaaatgaaatggttgtgcaatcttgttt |
45975234 |
T |
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| Q |
401 |
agttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45975233 |
agttttgtacccatagacgataagaaacagactcagcatcccaattttcagtgccaggagtgagaacaggctccgacacaagacttgccaaagaagcaag |
45975134 |
T |
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| Q |
501 |
cctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaacccgtct |
561 |
Q |
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| T |
45975133 |
cctcttcgctaacgtaagctgcaggatatagctttcttcacacttcttcaccaacccgtct |
45975073 |
T |
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