View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8021_high_3 (Length: 229)

Name: NF8021_high_3
Description: NF8021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8021_high_3
NF8021_high_3
[»] chr5 (1 HSPs)
chr5 (141-211)||(31423131-31423201)
[»] chr8 (1 HSPs)
chr8 (141-210)||(4838281-4838350)
[»] chr4 (1 HSPs)
chr4 (141-210)||(12997943-12998012)
[»] chr2 (1 HSPs)
chr2 (141-210)||(20622861-20622930)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 31423201 - 31423131
Alignment:
Q  141 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttacc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423201 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttacc 31423131  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 4838281 - 4838350
Alignment:
Q  141 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838281 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 4838350  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 12998012 - 12997943
Alignment:
Q  141 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12998012 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 12997943  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 20622930 - 20622861
Alignment:
Q  141 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20622930 cgacaattaaagcattaaaaatgcatgaaatatagttaacaataagatgcatgagttttaaaagagttac 20622861  T

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