View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8021_high_5 (Length: 206)
Name: NF8021_high_5
Description: NF8021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8021_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 12095776 - 12095981
Alignment:
| Q |
1 |
tgttattttccaaccgtaagaccagcaaattcgagtccagttgtcccactggcattaccaccttagagaggtcgaacgacaacttgttttgcgacaagtc |
100 |
Q |
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| T |
12095776 |
tgttattttccaaccgtaagacaagcaaattcgattccagttgtcccactggcattaccaccttagagaggtcgaatgacaacttgtttcgcgacaagtc |
12095875 |
T |
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| Q |
101 |
cagatgagccaactcagtcttactttccccgaacaagaaagacgcatcaccggtcaactggttcccagcagcctcgaagatactgaaattaactgtgccc |
200 |
Q |
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| T |
12095876 |
cagatgagccaactcagtcttactttccccgaacaagaaagacgcatcaccggtcaactggttcccagcagcctcgaaaatactgaaattaactttgccc |
12095975 |
T |
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| Q |
201 |
aacgat |
206 |
Q |
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|||||| |
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| T |
12095976 |
aacgat |
12095981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 12079137 - 12079341
Alignment:
| Q |
2 |
gttattttccaaccgtaagaccagcaaattcgagtccagttgtcccactggcattaccaccttagagaggtcgaacgacaacttgttttgcgacaagtcc |
101 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||| |
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| T |
12079137 |
gttattttccaaccgcaagaccagcaaattcgagtccagttgtcccactggcattaccaccttaccgaggtcaaacgacagcttgtttcgcgacaagtcc |
12079236 |
T |
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| Q |
102 |
agatgagccaactcagtcttactttccccgaacaagaaagacgcatcaccggtcaactggttcccagcagcctcgaagatactgaaattaactgtgccca |
201 |
Q |
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| T |
12079237 |
aggtgagccaactcagtcttatctttcccgaacaagaacgatgcatcaccggtcaaccggttcccagcagcctcgaaaatactgaaattaactgtgccca |
12079336 |
T |
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| Q |
202 |
acgat |
206 |
Q |
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||||| |
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| T |
12079337 |
acgat |
12079341 |
T |
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