View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8021_low_2 (Length: 427)
Name: NF8021_low_2
Description: NF8021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8021_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 12096147 - 12096548
Alignment:
| Q |
4 |
tggttgttattaagccctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatttaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
12096147 |
tggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaa |
12096246 |
T |
|
| Q |
104 |
ggtgaggaagtctagcaatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgagggg |
203 |
Q |
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||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || |
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| T |
12096247 |
ggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcgaaaaatgagggtctcgaggtaaggtagatcggcgatgagtgg |
12096346 |
T |
|
| Q |
204 |
cgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccat |
303 |
Q |
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| T |
12096347 |
cgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccat |
12096446 |
T |
|
| Q |
304 |
ttgcaacagtctgtgtttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcaga |
403 |
Q |
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| T |
12096447 |
ttgcaacagtctgtgtgtgggatccaggttgagaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcaga |
12096546 |
T |
|
| Q |
404 |
gg |
405 |
Q |
| |
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|| |
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| T |
12096547 |
gg |
12096548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 415
Target Start/End: Original strand, 12079507 - 12079918
Alignment:
| Q |
4 |
tggttgttattaagccctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatttaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
12079507 |
tggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcagggataggaccagttaggttgttccaattaaggaggacaaatttaa |
12079606 |
T |
|
| Q |
104 |
ggtgaggaagtctagcaatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgagggg |
203 |
Q |
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||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || |
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| T |
12079607 |
ggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcgtaaaatgagggtctcgaggtaaggtagatcggcgatgagtgg |
12079706 |
T |
|
| Q |
204 |
cgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccat |
303 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12079707 |
cggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccat |
12079806 |
T |
|
| Q |
304 |
ttgcaacagtctgtgtttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggcaga |
403 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12079807 |
ttgcaacagtctgtgtgtgggatccaggttgagaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcaga |
12079906 |
T |
|
| Q |
404 |
ggcgcgggcgtg |
415 |
Q |
| |
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|||| ||||||| |
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| T |
12079907 |
ggcgtgggcgtg |
12079918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 1249122 - 1248721
Alignment:
| Q |
1 |
aaatggttgttattaagccctaaggtggctaaattggggagtttgctaaagtaatcagggataggaccagttaggctgttccaattaagaaggacaaatt |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |
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| T |
1249122 |
aaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagt |
1249023 |
T |
|
| Q |
101 |
taaggtgaggaagtctagcaatggcttgaggaataggaccagtgaggttaggaaggaggcggaaaatgagggtctcgaggtaaggtagatcagcgatgag |
200 |
Q |
| |
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|||||||||||||| | |||||||||||||| |||||||| ||||||||||| ||| |||||| ||||||||||| ||||| ||||| ||||| ||||| |
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| T |
1249022 |
taaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgag |
1248923 |
T |
|
| Q |
201 |
gggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgc |
300 |
Q |
| |
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|| ||||| |||||||| || |||||||| || || ||||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||| ||| |
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| T |
1248922 |
tggggggatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataagactatgcgc |
1248823 |
T |
|
| Q |
301 |
catttgcaacagtctgtgtttgggatccaggttgagaagaggcttgtattgtggaagtaatatttgatcttgaggaggactttttcgtcgtctgggtggc |
400 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| ||||||| |
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| T |
1248822 |
catttgcaacaatctgtttttggagtccaggttgagaagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcgtcgtcggggtggc |
1248723 |
T |
|
| Q |
401 |
ag |
402 |
Q |
| |
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|| |
|
|
| T |
1248722 |
ag |
1248721 |
T |
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