View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8021_low_7 (Length: 231)
Name: NF8021_low_7
Description: NF8021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8021_low_7 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 8205846 - 8206028
Alignment:
| Q |
19 |
gtaggtaggcagtttctacaaaccctccatcagaacatcttaattcaaaaaacaatgcgtagttttcatgtcatattcaaaactcattagagttgaggtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8205846 |
gtaggtaggcagtttctacaaaccctccatcagaacatcttaattcaaaaaacaatgcgtagttttcatgtcagattcaaaactcattagagttgaggtt |
8205945 |
T |
|
| Q |
119 |
attacagttcactaagttagtcatgaagaagtgagtagacgaatgtgggagtgaagacgaaagacaccggtcatctatctacc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8205946 |
attacagttcactaagttagtcatgaagaagtgagtagatgaatgtgggagtgaagacgaaagacactggtcatctatctacc |
8206028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 49936824 - 49936853
Alignment:
| Q |
202 |
ggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49936824 |
ggaagtggttatggtgcataaggaaatcct |
49936853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 40022382 - 40022412
Alignment:
| Q |
201 |
cggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40022382 |
cggaagtggttatggtgcataaggaaatcct |
40022412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 34647166 - 34647195
Alignment:
| Q |
202 |
ggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34647166 |
ggaagtggttatggtgcataaggaaatcct |
34647195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 13635611 - 13635641
Alignment:
| Q |
201 |
cggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13635611 |
cggaagtggttatggtgcataaggaaatcct |
13635641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 763880 - 763847
Alignment:
| Q |
198 |
taccggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
763880 |
taccgggagtggttatggtgcataaggaaatcct |
763847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 35737130 - 35737098
Alignment:
| Q |
199 |
accggaagtggttatggtgcataaggaaatcct |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
35737130 |
accgggagtggttatggtgcataaggaaatcct |
35737098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University