View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8022_low_1 (Length: 529)
Name: NF8022_low_1
Description: NF8022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8022_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 43 - 514
Target Start/End: Original strand, 31425360 - 31425832
Alignment:
| Q |
43 |
tttattgcacgttaatgtcgcattctttcatagttaatgatgttgataccatatcgtctgatacttaatcaacaataatttgtggttgggttttggttcc |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425360 |
tttattgcacgttaatgtcgcattctttcatagttaatgatgttgataccatatcgtctgatacttaatcaacaataatttgtggttgggttttggttcc |
31425459 |
T |
|
| Q |
143 |
aatttatttatttttgtgacaaactaacaatttagttttttctcatgaagtacgtaatattattttcgtggttttctaaagtaaccttttgatttttaag |
242 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425460 |
aatttatttatttttgcgacaaactaacaatttagttttttctcatgaagtacctaatattattttcgtggttttctaaagtaaccttttgatttttaag |
31425559 |
T |
|
| Q |
243 |
cgaaaagactatactaatatcgagttcatctgaatctttagtaagtaaaatttagcaaaaaattgttccaccgttgaacttggaatttttcaaatgattt |
342 |
Q |
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||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425560 |
cgaaaagactaaactaatctcgagttcatccgaatatttagtaagtaaaatttagcaaaaaattgttccaccgttgaacttggaatttttcaaatgattt |
31425659 |
T |
|
| Q |
343 |
gtcatagagagcatatcaaccacttgagacaaatcaattaatttatag-nnnnnnnnnnnnggtgaaaatcgggtgtccttcgtgcatgcaactgcagag |
441 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||| |||| |
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| T |
31425660 |
gtcatagagagcatatcaaccactcgagacaaatcaattaatttattgttatttttttttttgtgaaaatggggtgtccttcgtgcatacaactgtagag |
31425759 |
T |
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| Q |
442 |
actaatctcttgagtcttgtagaactcaaatgagtggtaaactcttcctaaaatttttgacattgttgcatgt |
514 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31425760 |
actaatctcttaagtcttgtagaattcaaatgagtggtaaactcttcctaaaatttttgacattgttgcatgt |
31425832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 1424739 - 1424668
Alignment:
| Q |
403 |
ggtgaaaatcgggtgtccttcgtgcatgcaactgcagagactaatctcttgagtcttgtagaactcaaatga |
474 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||| | || ||||||| |
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| T |
1424739 |
ggtgtaaatcgggtgtccttcgtgcgcgcaactgcggagactaatctctcaagtcttgtgggacccaaatga |
1424668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 24579434 - 24579485
Alignment:
| Q |
408 |
aaatcgggtgtccttcgtgcatgcaactgcagagactaatctcttgagtctt |
459 |
Q |
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| T |
24579434 |
aaatcgggtatcctccgtgtatgcaactgcagagactaatctctcgagtctt |
24579485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 486
Target Start/End: Original strand, 41446647 - 41446710
Alignment:
| Q |
423 |
cgtgcatgcaactgcagagactaatctcttgagtcttgtagaactcaaatgagtggtaaactct |
486 |
Q |
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| T |
41446647 |
cgtgcatgcaacagcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactct |
41446710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 41433938 - 41433996
Alignment:
| Q |
428 |
atgcaactgcagagactaatctcttgagtcttgtagaactcaaatgagtggtaaactct |
486 |
Q |
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|||||||||| ||||||||||||| ||||||||| | || ||||||| |||||||||| |
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| T |
41433938 |
atgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactct |
41433996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 513
Target Start/End: Complemental strand, 24801511 - 24801437
Alignment:
| Q |
439 |
gagactaatctcttgagtcttgtagaactcaaatgagtggtaaactcttcctaaaatttttgacattgttgcatg |
513 |
Q |
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||||||||||||||||||||||| | ||||||||| |||||||||| ||||| | |||| ||| || |||||| |
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| T |
24801511 |
gagactaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatg |
24801437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 514
Target Start/End: Original strand, 32642992 - 32643069
Alignment:
| Q |
437 |
cagagactaatctcttgagtcttgtagaactcaaatgagtggtaaactcttcctaaaatttttgacattgttgcatgt |
514 |
Q |
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||||||||||||||| ||||||||| | | |||||||| | ||||||| |||||| ||||||| ||||||||||| |
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| T |
32642992 |
cagagactaatctctcgagtcttgtgggattcaaatgaacagcaaactctccctaaatgttttgacgttgttgcatgt |
32643069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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