View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8022_low_2 (Length: 390)
Name: NF8022_low_2
Description: NF8022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8022_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 31805883 - 31806247
Alignment:
| Q |
1 |
tcgttagtggctgctctttcttcttatggactcaagttaacactatgannnnnnngttgttgatgttacatcaattaagacacatgcatccatttatagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31805883 |
tcgttagtggctgctctttcttcttatggactcaagttaacactatgatttttttgttgttgatgttacatcaattaatacacatgcatccatttatagc |
31805982 |
T |
|
| Q |
101 |
atatatgaattgctgcattgcctttattccttccctattatgtagagtaaatgaactgctacatctatgcattgatgctcatatgtattgtttagtaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31805983 |
atatatgaattgctgcattgcctttattccttccctattatgtagagtaaatgaactgctacatctatgcattgatgctcatatatattgtttagtaggt |
31806082 |
T |
|
| Q |
201 |
atagtatatatttcttttaaatttggtagttgtatggtgttgttattaataataatgatcacaataatggttggaatgtcctgaatgcagttaagttgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806083 |
atagtatatatttcttttaaatttggtggttgtatggtgttgttattaataataatgatcacaataatggttggaatgtcctgaatgcagttaagttgtg |
31806182 |
T |
|
| Q |
301 |
cactatccatgaaagagatatgtaattcaaaataacatggcggtatcttatgccattaatgacta |
365 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806183 |
cattatccatgaaagagatgtgtaattcaaaataacatggcggtatcttatgccattaatgacta |
31806247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University