View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8022_low_4 (Length: 211)
Name: NF8022_low_4
Description: NF8022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8022_low_4 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 30264375 - 30264554
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264375 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
30264474 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30264475 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt |
30264554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 30287813 - 30287634
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287813 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
30287714 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287713 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt |
30287634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 30048573 - 30048723
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
30048573 |
catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggt |
30048672 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
168 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30048673 |
tgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30048723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 30062914 - 30063064
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
30062914 |
catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggt |
30063013 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt |
168 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||| |||| |||||| |
|
|
| T |
30063014 |
tgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt |
30063064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 30032327 - 30032483
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
30032327 |
catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggt |
30032426 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttc |
174 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| ||||| |
|
|
| T |
30032427 |
tgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 30228712 - 30228850
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
30228712 |
catcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggt |
30228811 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggttt |
156 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
30228812 |
tgttggataattgataatatgaatttcccaaagtggttt |
30228850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 30271269 - 30271446
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||| || |
|
|
| T |
30271269 |
catcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttct |
30271368 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata |
195 |
Q |
| |
|
||||||||| || || | ||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |
|
|
| T |
30271369 |
tgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata |
30271446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 30280920 - 30280743
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||| |
|
|
| T |
30280920 |
catcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct |
30280821 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata |
195 |
Q |
| |
|
||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |
|
|
| T |
30280820 |
tgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata |
30280743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 30304336 - 30304513
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||| |
|
|
| T |
30304336 |
catcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct |
30304435 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata |
195 |
Q |
| |
|
||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || | |||||||||||||| |
|
|
| T |
30304436 |
tgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata |
30304513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 30220352 - 30220209
Alignment:
| Q |
18 |
catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||| |
|
|
| T |
30220352 |
catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct |
30220253 |
T |
|
| Q |
118 |
tgttggatacttgataacatgtatttcccaaaggggtttgtctt |
161 |
Q |
| |
|
||||||||| || || | ||| ||||||||||||||||| |||| |
|
|
| T |
30220252 |
tgttggatatttaatcaaatgaatttcccaaaggggtttatctt |
30220209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 79567 - 79679
Alignment:
| Q |
38 |
gaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacat |
137 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| || |
|
|
| T |
79567 |
gaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatat |
79666 |
T |
|
| Q |
138 |
gtatttcccaaag |
150 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
79667 |
gtatctcccaaag |
79679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 72506 - 72612
Alignment:
| Q |
41 |
agaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgta |
140 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| || ||| ||| ||||| |||||||||| || |||| ||| | |
|
|
| T |
72506 |
agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaa |
72605 |
T |
|
| Q |
141 |
tttccca |
147 |
Q |
| |
|
||||||| |
|
|
| T |
72606 |
tttccca |
72612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 2311448 - 2311381
Alignment:
| Q |
32 |
agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat |
99 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2311448 |
agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat |
2311381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University