View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_high_12 (Length: 239)
Name: NF8023_high_12
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 44574756 - 44574985
Alignment:
| Q |
2 |
tcttcataaagaaatttgtagagcaaacaagttaaactctcccctctcaatcaaaatttttccatagtcaaagatcaaacttcagatcacttatttaaga |
101 |
Q |
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| T |
44574756 |
tcttcataaagaaatttgtagagcaaacaagttaaactctcccctctcaatcaaattttttccatagtcaaagatcaaacttcagatcacttatttaaga |
44574855 |
T |
|
| Q |
102 |
agtctaaatttcttaacatttagaccaatctattatatgttcatcatatcttgcttt--------nnnnnnnnnnttcgattgattaatatattatgttg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
44574856 |
agtctaaatttcttaacatttagaccaatctattatatgttcatcatatcttgctttaaaaaataaaataaaaaattcgattgattaatatattacgttg |
44574955 |
T |
|
| Q |
194 |
ataggacatcgcatgattctgacctaacct |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44574956 |
ataggacatcgcatgattctgacctaacct |
44574985 |
T |
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