View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8023_high_15 (Length: 204)

Name: NF8023_high_15
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8023_high_15
NF8023_high_15
[»] chr4 (21 HSPs)
chr4 (85-165)||(54420839-54420919)
chr4 (17-75)||(54421837-54421895)
chr4 (115-204)||(38434558-38434647)
chr4 (109-161)||(37869547-37869599)
chr4 (112-165)||(9474636-9474689)
chr4 (106-161)||(1657701-1657756)
chr4 (112-161)||(9661787-9661836)
chr4 (109-165)||(1646068-1646124)
chr4 (112-161)||(28588495-28588544)
chr4 (109-200)||(32188933-32189027)
chr4 (123-161)||(4634228-4634266)
chr4 (166-204)||(16991883-16991921)
chr4 (166-204)||(23067913-23067951)
chr4 (166-200)||(28588572-28588606)
chr4 (166-204)||(52555786-52555824)
chr4 (111-149)||(53903562-53903600)
chr4 (166-204)||(54420777-54420815)
chr4 (167-200)||(1646010-1646043)
chr4 (113-165)||(6408374-6408426)
chr4 (113-165)||(9549412-9549464)
chr4 (112-152)||(14542659-14542699)
[»] chr7 (19 HSPs)
chr7 (94-165)||(49166843-49166914)
chr7 (100-162)||(8611752-8611814)
chr7 (101-165)||(24470318-24470382)
chr7 (101-165)||(24475266-24475330)
chr7 (113-165)||(37399551-37399603)
chr7 (109-161)||(40775198-40775250)
chr7 (110-165)||(47749666-47749721)
chr7 (166-204)||(24470406-24470444)
chr7 (166-204)||(24475354-24475392)
chr7 (105-161)||(135236-135292)
chr7 (164-200)||(42490711-42490747)
chr7 (106-165)||(11001789-11001847)
chr7 (110-161)||(35661465-35661516)
chr7 (166-204)||(8611687-8611725)
chr7 (166-204)||(30992888-30992926)
chr7 (166-204)||(43807215-43807253)
chr7 (113-165)||(25855351-25855403)
chr7 (105-161)||(35135314-35135370)
chr7 (109-165)||(35141880-35141936)
[»] chr2 (28 HSPs)
chr2 (94-165)||(41176778-41176849)
chr2 (93-165)||(44167836-44167908)
chr2 (97-165)||(43566796-43566864)
chr2 (106-165)||(25516422-25516481)
chr2 (93-165)||(36507846-36507918)
chr2 (112-161)||(32909010-32909059)
chr2 (109-161)||(3602916-3602968)
chr2 (135-198)||(29734167-29734232)
chr2 (112-161)||(25771379-25771428)
chr2 (112-165)||(40125323-40125376)
chr2 (121-165)||(3464902-3464946)
chr2 (106-161)||(6089821-6089876)
chr2 (166-204)||(7640421-7640459)
chr2 (166-204)||(44167774-44167812)
chr2 (112-161)||(3390366-3390415)
chr2 (132-165)||(27191462-27191495)
chr2 (132-165)||(27841276-27841309)
chr2 (112-165)||(37883587-37883640)
chr2 (165-204)||(25516504-25516543)
chr2 (166-204)||(6089904-6089942)
chr2 (166-204)||(27191400-27191438)
chr2 (166-204)||(27841214-27841252)
chr2 (166-204)||(40125400-40125438)
chr2 (166-204)||(42105817-42105855)
chr2 (109-158)||(21571629-21571677)
chr2 (112-161)||(27024270-27024319)
chr2 (112-165)||(42105879-42105932)
chr2 (105-161)||(16720948-16721004)
[»] chr3 (29 HSPs)
chr3 (100-165)||(50519712-50519777)
chr3 (104-165)||(22286876-22286937)
chr3 (97-161)||(41882539-41882603)
chr3 (110-165)||(20201185-20201240)
chr3 (110-165)||(20203367-20203422)
chr3 (109-165)||(21803461-21803517)
chr3 (105-165)||(28995420-28995479)
chr3 (113-165)||(20251586-20251638)
chr3 (113-165)||(35501885-35501937)
chr3 (105-165)||(47914710-47914772)
chr3 (112-161)||(1165527-1165576)
chr3 (113-161)||(14741445-14741493)
chr3 (109-165)||(29776803-29776859)
chr3 (106-162)||(33978050-33978106)
chr3 (101-148)||(3088768-3088815)
chr3 (105-164)||(27056019-27056080)
chr3 (109-158)||(43242741-43242791)
chr3 (166-204)||(45664240-45664278)
chr3 (166-204)||(50519801-50519839)
chr3 (112-161)||(43029617-43029666)
chr3 (166-200)||(20201127-20201161)
chr3 (166-200)||(20203309-20203343)
chr3 (166-200)||(21803541-21803575)
chr3 (166-200)||(35501828-35501862)
chr3 (166-204)||(41882473-41882511)
chr3 (112-165)||(42106046-42106098)
chr3 (168-204)||(3088727-3088763)
chr3 (113-165)||(40462122-40462174)
chr3 (110-162)||(54240057-54240109)
[»] chr8 (17 HSPs)
chr8 (100-197)||(16996958-16997052)
chr8 (107-165)||(37129785-37129842)
chr8 (115-165)||(9269958-9270008)
chr8 (115-165)||(37719788-37719838)
chr8 (112-165)||(23766676-23766729)
chr8 (109-165)||(14115919-14115975)
chr8 (109-165)||(36545908-36545963)
chr8 (119-161)||(31874026-31874067)
chr8 (166-200)||(9270032-9270066)
chr8 (166-200)||(9992676-9992710)
chr8 (109-158)||(9992596-9992645)
chr8 (166-199)||(31874095-31874128)
chr8 (113-165)||(32061728-32061781)
chr8 (111-159)||(7281260-7281308)
chr8 (166-198)||(10042772-10042804)
chr8 (107-159)||(12244351-12244403)
chr8 (112-152)||(44295243-44295283)
[»] chr1 (14 HSPs)
chr1 (91-204)||(4564464-4564567)
chr1 (109-165)||(14717369-14717425)
chr1 (113-200)||(15276519-15276610)
chr1 (109-165)||(30853910-30853966)
chr1 (112-161)||(22345043-22345092)
chr1 (112-165)||(37685223-37685275)
chr1 (112-165)||(37700243-37700295)
chr1 (17-71)||(20129230-20129284)
chr1 (166-204)||(23320451-23320489)
chr1 (166-204)||(44562814-44562852)
chr1 (112-165)||(26199531-26199584)
chr1 (100-161)||(45658637-45658698)
chr1 (166-204)||(5832244-5832282)
chr1 (110-159)||(23257038-23257087)
[»] chr5 (11 HSPs)
chr5 (102-159)||(28618528-28618585)
chr5 (112-161)||(31645763-31645812)
chr5 (105-156)||(19646186-19646237)
chr5 (112-165)||(18472849-18472902)
chr5 (110-161)||(34894047-34894098)
chr5 (166-204)||(4070565-4070603)
chr5 (115-161)||(6887309-6887355)
chr5 (112-162)||(22397678-22397728)
chr5 (170-204)||(28618619-28618653)
chr5 (166-200)||(34893985-34894019)
chr5 (106-165)||(4070483-4070542)
[»] chr6 (8 HSPs)
chr6 (109-165)||(32574384-32574440)
chr6 (113-165)||(16913263-16913315)
chr6 (109-165)||(20844938-20844994)
chr6 (110-165)||(7049179-7049234)
chr6 (166-204)||(19759799-19759837)
chr6 (113-162)||(8633294-8633343)
chr6 (166-200)||(548934-548968)
chr6 (166-200)||(20845019-20845053)
[»] scaffold0045 (2 HSPs)
scaffold0045 (121-165)||(9775-9819)
scaffold0045 (166-204)||(9713-9751)
[»] scaffold0665 (1 HSPs)
scaffold0665 (109-165)||(1218-1274)
[»] scaffold0316 (1 HSPs)
scaffold0316 (109-165)||(12321-12377)
[»] scaffold1294 (1 HSPs)
scaffold1294 (110-165)||(712-767)
[»] scaffold0012 (1 HSPs)
scaffold0012 (111-162)||(244567-244618)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 54420919 - 54420839
Alignment:
Q  85 ttgttgcttatcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  54420919 ttgttgcttatattttattattttcctttctctcctgtgagccgtcacacgaaccctagtttcttctccttcatccaccaa 54420839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 54421895 - 54421837
Alignment:
Q  17 tcaagagtggagttgcatgcatagggccaaaaaacaagttcataatctgccatgtttat 75  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  54421895 tcaagagtggagttgcatgcatagggccaaaaaacaagttcatagtatgccatgtttat 54421837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 38434558 - 38434647
Alignment:
Q  115 tctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaatttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    ||||||||||||||||||  ||| |||| ||| || |||||||||||||||   ||||| ||||| ||||||||||||||||||||||||    
T  38434558 tctcttgtgagccgtcaccaaaatcctaattttttatccttcatccaccaaagagacccgaaatcacccctctaactcgtttttctattt 38434647  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 37869599 - 37869547
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  37869599 cctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcca 37869547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 9474689 - 9474636
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  9474689 ttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcaaccaa 9474636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 1657756 - 1657701
Alignment:
Q  106 tttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||| |||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  1657756 tttcccttctctcttgtgagacgtcactaaaaccctagtttcttctccttcatcca 1657701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9661787 - 9661836
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  9661787 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatcca 9661836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 1646124 - 1646068
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||| |||||||||||  ||||||||||||||||| |||||| ||||||    
T  1646124 cctttctctcttttgagccgtcactaaaaccctagtttcttcttcttcattcaccaa 1646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 28588495 - 28588544
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||||||    
T  28588495 ttctcttttgtgagccgtcaccaaaatcctagtttcttctccttcatcca 28588544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 32188933 - 32189027
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa---tttgacccaaaatctcccctctaactcgtttttct 200  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||| ||||| || |||   ||||| || | ||| ||||||||| ||||||||||    
T  32188933 cctttctcttttgtgagccgtcaccaaaaccctagtttattctctttcattcatcaaatttttgatcctatatcacccctctaattcgtttttct 32189027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 4634228 - 4634266
Alignment:
Q  123 gagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4634228 gagccgtcaccaaaaccctagtttcttctccttcatcca 4634266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 16991883 - 16991921
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  16991883 tttgacccaaaatcacccatctaactcgtttttctattt 16991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 23067951 - 23067913
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  23067951 tttgaccctaaatcacccctctaactcgtttttctattt 23067913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 28588572 - 28588606
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  28588572 tttgacccaaaatcacccctctaactcgtttttct 28588606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 52555824 - 52555786
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| || |||||||||||||||||||||    
T  52555824 tttgacccaaaatcacctctctaactcgtttttctattt 52555786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 53903562 - 53903600
Alignment:
Q  111 tttctctcttgtgagccgtcacacaaaccctagtttctt 149  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  53903562 tttctcttctgtgagccgtcacacaaaccctagtttctt 53903600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 54420815 - 54420777
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  54420815 tttgacccaaaatcactcctctaactcgtttttctattt 54420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 1646043 - 1646010
Alignment:
Q  167 ttgacccaaaatctcccctctaactcgtttttct 200  Q
    ||||||||||||| ||||||||||||||||||||    
T  1646043 ttgacccaaaatcacccctctaactcgtttttct 1646010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 6408374 - 6408426
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||| |||||   | || ||||||||||||||||||||||||||    
T  6408374 tctctcttgtgagtcgtcatcaatactctagtttcttctccttcatccaccaa 6408426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 9549412 - 9549464
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||| ||||||||||   ||||| |||||||||||| ||||||||||||    
T  9549412 tctctcttatgagccgtcatcaaaaccttagtttcttctcattcatccaccaa 9549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 14542699 - 14542659
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctc 152  Q
    |||||||| ||||||||||||  ||||||||||||||||||    
T  14542699 ttctctctagtgagccgtcaccaaaaccctagtttcttctc 14542659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 49166843 - 49166914
Alignment:
Q  94 atcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49166843 atcttttattattttcctttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 49166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 8611814 - 8611752
Alignment:
Q  100 tattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  8611814 tattattttcctttctctcctgtgagtcgtcacacaaaccctagtttcttctccttcatccac 8611752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 24470318 - 24470382
Alignment:
Q  101 attattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  24470318 attattttcttttctctcctatgagccgtcacacaaaccctagtttcttctccttcatccaccaa 24470382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 24475266 - 24475330
Alignment:
Q  101 attattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  24475266 attattttcttttctctcctatgagccgtcacacaaaccctagtttcttctccttcatccaccaa 24475330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 37399551 - 37399603
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  37399551 tctctcttgtgagccgtcacgcaaaccctaatttcttcttcttcatccaccaa 37399603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 40775198 - 40775250
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  40775198 cctttctctcttgtgagtcgtcaccaaaaccctaatttcttctccttcatcca 40775250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 47749666 - 47749721
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||| |||| |||||||||||||  |||||||| ||||||||||||||||||||||    
T  47749666 ctttatctcctgtgagccgtcacgaaaaccctaatttcttctccttcatccaccaa 47749721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 24470406 - 24470444
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24470406 tttgacccaaaatcacccctctaactcgtttttctattt 24470444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 24475354 - 24475392
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24475354 tttgacccaaaatcacccctctaactcgtttttctattt 24475392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 135292 - 135236
Alignment:
Q  105 ttttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||  |||| ||||||||||||   |||||||||||||||||||||||||||    
T  135292 ttttccttcgtctcctgtgagccgtcatcaaaaccctagtttcttctccttcatcca 135236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 42490711 - 42490747
Alignment:
Q  164 aatttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||||| ||||||||||||||||||||    
T  42490711 aatttgacccaaaatcacccctctaactcgtttttct 42490747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 11001789 - 11001847
Alignment:
Q  106 tttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||| ||||||| ||| |||| ||| |||| |||||||||||||    
T  11001789 tttcctttctctcttgtgagtcgtcaca-aaatcctaattttttcttcttcatccaccaa 11001847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 35661465 - 35661516
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||| ||||||||||||||||||  | | |||||||||||||||||||||||    
T  35661465 ctttttctcttgtgagccgtcaccaatatcctagtttcttctccttcatcca 35661516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 8611725 - 8611687
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  8611725 tttgacccaatatcacccctctaactcgtttttctattt 8611687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 30992926 - 30992888
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  30992926 tttgacccaaaatcacccctctaacttgtttttctattt 30992888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 43807253 - 43807215
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| || |||||||||||||||||||||    
T  43807253 tttgacccaaaatcacctctctaactcgtttttctattt 43807215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 25855403 - 25855351
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||| |||| |||||  ||||| |||||| ||||||||||||||||||    
T  25855403 tctctcttgcgagctgtcaccgaaaccttagttttttctccttcatccaccaa 25855351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 35135370 - 35135314
Alignment:
Q  105 ttttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||||||||||||| ||  |||||  ||||||||| || ||||||||||||||    
T  35135370 ttttcctttctctcttgtaagttgtcaccaaaaccctagattattctccttcatcca 35135314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 35141936 - 35141880
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||| ||||||||||||||||||  ||| | |||||| ||||||||||| ||||||    
T  35141936 cctttttctcttgtgagccgtcaccaaaatcatagtttattctccttcattcaccaa 35141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 41176778 - 41176849
Alignment:
Q  94 atcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41176778 atcttttattattttcctttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 41176849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 44167908 - 44167836
Alignment:
Q  93 tatcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44167908 tatcttttattattttcctttttctcttgtgagccgtcacacaagccctagtttcttctccttcatccaccaa 44167836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 43566796 - 43566864
Alignment:
Q  97 ttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  43566796 tttttttattttcctttctctcctgtgagccgtcacacaaaccatagtttcttctccttcatccaccaa 43566864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 25516422 - 25516481
Alignment:
Q  106 tttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25516422 tttcctttctctcctgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 25516481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 36507846 - 36507918
Alignment:
Q  93 tatcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||| | |||| | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  36507846 tatcttttattattttcctctttctcctttgagctgtcacacaagccctagtttcttctccttcatccaccaa 36507918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 32909010 - 32909059
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  32909010 ttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcca 32909059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 3602916 - 3602968
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  3602916 cctttctctcttgtgagccgtcaccaaaatcctagtttcttctccttcatcca 3602968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 29734167 - 29734232
Alignment:
Q  135 aaaccctagtttcttctccttcatccaccaa--tttgacccaaaatctcccctctaactcgttttt 198  Q
    |||||||||||||||||| |||||||| |||  |||||||||||||| | ||||||||||||||||    
T  29734167 aaaccctagtttcttctcattcatccatcaaattttgacccaaaatcactcctctaactcgttttt 29734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 25771379 - 25771428
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  25771379 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatcca 25771428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 40125323 - 40125376
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40125323 ttctctcttgtgagccgtcatcaaaaccttagtttcttctccttcatccaccaa 40125376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 3464902 - 3464946
Alignment:
Q  121 gtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  3464902 gtgagccgtcacacaaactctaatttcttctccttcatccaccaa 3464946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 6089821 - 6089876
Alignment:
Q  106 tttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||||||| ||||||||  ||||| |||||||| ||||||||||||||||||    
T  6089821 tttcctttctctattgtgagctatcacaaaaaccctaatttcttctccttcatcca 6089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 7640459 - 7640421
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7640459 tttgacccaaaatcacccctctaactcgtttttctattt 7640421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 44167812 - 44167774
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44167812 tttgacccaaaatcacccctctaactcgtttttctattt 44167774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 3390366 - 3390415
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||||||    
T  3390366 ttctctctactgagccgtcaccaaaaccctagtttcttctccttcatcca 3390415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 27191495 - 27191462
Alignment:
Q  132 cacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||||||||||||    
T  27191495 cacaaaccctagtttcttctccttcatccaccaa 27191462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 27841309 - 27841276
Alignment:
Q  132 cacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||||||||||||    
T  27841309 cacaaaccctagtttcttctccttcatccaccaa 27841276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 37883587 - 37883640
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||  ||| | || ||||||||||||||||||||||    
T  37883587 ttctctcttgtgagccgtcactaaaatcataatttcttctccttcatccaccaa 37883640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 25516504 - 25516543
Alignment:
Q  165 atttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  25516504 atttgacccaaaatcacccctctaactcatttttctattt 25516543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 6089904 - 6089942
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  6089904 tttgacccaaaatcacccctctaattcgtttttctattt 6089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 27191438 - 27191400
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  27191438 tttgaccctaaatcacccctctaactcgtttttctattt 27191400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 27841252 - 27841214
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  27841252 tttgaccctaaatcacccctctaactcgtttttctattt 27841214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 40125400 - 40125438
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  40125400 tttgacccaaaatcacccctctaacttgtttttctattt 40125438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 42105855 - 42105817
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| || |||||||||||||||||||||    
T  42105855 tttgacccaaaatcaccactctaactcgtttttctattt 42105817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 21571629 - 21571677
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcat 158  Q
    ||||||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  21571629 cctttctctattgtgagccgtcaca-aaaccctaacttcttctccttcat 21571677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 27024319 - 27024270
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||| ||||||  |||| ||||||||||||||||||||||    
T  27024319 ttctctctagtgagtcgtcaccaaaactctagtttcttctccttcatcca 27024270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 42105932 - 42105879
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||| || |||||||||| |||||||| ||| || |||||||||||||||    
T  42105932 ttctctctcgttagccgtcacaaaaaccctaatttattttccttcatccaccaa 42105879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 16721004 - 16720948
Alignment:
Q  105 ttttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||||||||| ||||||||||  ||| ||||||||  | |||||||||||    
T  16721004 ttttcctttctctcttgggagccgtcaccaaaatcctagttttctttccttcatcca 16720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 50519712 - 50519777
Alignment:
Q  100 tattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50519712 tattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 50519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 22286937 - 22286876
Alignment:
Q  104 attttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  22286937 attttcctttctctcctgtgagccgtcacacaagccctagtttcttctccttcatccaccaa 22286876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 41882603 - 41882539
Alignment:
Q  97 ttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  41882603 ttttattattttcctttctctcctgtgagccgttacacaagccctagtttcttctccttcatcca 41882539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 20201240 - 20201185
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  20201240 ctttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaa 20201185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 20203422 - 20203367
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  20203422 ctttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaa 20203367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 21803461 - 21803517
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  21803461 cctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaa 21803517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 28995479 - 28995420
Alignment:
Q  105 ttttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28995479 ttttcctttctcttttgtgagccgtcaca-aaactctagtttcttctccttcatccaccaa 28995420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 20251586 - 20251638
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  20251586 tctctcttgtgagccgtcaccgaaaccctagtttattctccttcatccaccaa 20251638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 35501937 - 35501885
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  35501937 tctctcttgtgagccgtcaccgaaatcctagtttcttctccttcatccaccaa 35501885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 47914772 - 47914710
Alignment:
Q  105 ttttcctttctctctt--gtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||  ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  47914772 ttttcctttctctcttttgtgagccgtcacagaaatcctaatttcttctccttcatccaccaa 47914710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 1165576 - 1165527
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  1165576 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatcca 1165527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 14741493 - 14741445
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  14741493 tctcttttgtgagccgtcacataaaccctagttttttctccttcatcca 14741445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 29776859 - 29776803
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||| |||||||  ||||| |||||| ||||||||||||||||||    
T  29776859 cctttctctcttgtgaaccgtcactaaaaccttagttttttctccttcatccaccaa 29776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 33978106 - 33978050
Alignment:
Q  106 tttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    |||||||||| ||||||||||||||||| |||  ||||||||| |||||||||||||    
T  33978106 tttcctttctttcttgtgagccgtcacaaaaattctagtttctcctccttcatccac 33978050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 3088815 - 3088768
Alignment:
Q  101 attattttcctttctctcttgtgagccgtcacacaaaccctagtttct 148  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||    
T  3088815 attattttcctttctctcctctgagccgtcacacaaaccttagtttct 3088768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 27056080 - 27056019
Alignment:
Q  105 ttttcctttctctctt--gtgagccgtcacacaaaccctagtttcttctccttcatccacca 164  Q
    ||||||||||||||||  ||||||||||||  |||||||| ||| |||||||||||||||||    
T  27056080 ttttcctttctctcttttgtgagccgtcaccaaaaccctaattttttctccttcatccacca 27056019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 43242741 - 43242791
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctag-tttcttctccttcat 158  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  43242741 cctttctctcttgtgagccgtcacataaatcctagttttcttctccttcat 43242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 45664240 - 45664278
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  45664240 tttgacccaaaatcacccctctaactcgtttttctattt 45664278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 50519801 - 50519839
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50519801 tttgacccaaaatcacccctctaactcgtttttctattt 50519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 43029617 - 43029666
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||| ||||||  |||||||||||||||||||||||||||    
T  43029617 ttctctctagtgagtcgtcaccaaaaccctagtttcttctccttcatcca 43029666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 20201161 - 20201127
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  20201161 tttgacccaaaatcacccctctaactcgtttttct 20201127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 20203343 - 20203309
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  20203343 tttgacccaaaatcacccctctaactcgtttttct 20203309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 21803541 - 21803575
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  21803541 tttgacccaaaatcacccctctaactcgtttttct 21803575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 35501862 - 35501828
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  35501862 tttgacccaaaatcacccctctaactcgtttttct 35501828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 41882511 - 41882473
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  41882511 tttgacccaaaattacccctctaactcgtttttctattt 41882473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 42106046 - 42106098
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||| ||||||||||  ||||||||||||||||  |||||||||||||    
T  42106046 ttctctcttg-gagccgtcaccaaaaccctagtttcttcatcttcatccaccaa 42106098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 3088763 - 3088727
Alignment:
Q  168 tgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  3088763 tgacccaaaatcacccctctaattcgtttttctattt 3088727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 40462174 - 40462122
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||| ||||||| |||| |  |||||||||||||||||| ||||||||||||    
T  40462174 tctcttttgtgagacgtcgccaaaaccctagtttcttctctttcatccaccaa 40462122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 54240057 - 54240109
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    ||||||||||||||| ||||||   ||||| |||||||||||| |||||||||    
T  54240057 ctttctctcttgtgaaccgtcattaaaaccatagtttcttctcattcatccac 54240109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 3e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 16997052 - 16996958
Alignment:
Q  100 tattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaatttgacccaaaatctcccctctaactcgtttt 197  Q
    ||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||||||   |||||||||||| |||||||||||||||||    
T  16997052 tattattttcctttctctcctgtgagtcgtcacacaagctctagtttcttctccttcatccacca---tgacccaaaatcacccctctaactcgtttt 16996958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 37129842 - 37129785
Alignment:
Q  107 ttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  37129842 ttcctttctctcttgtgaggcgtcaca-aaaccctagtttattctccttcatccaccaa 37129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 9269958 - 9270008
Alignment:
Q  115 tctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  9269958 tctcttgtgagccgtcacgaaaactctagtttcttctccttcatccaccaa 9270008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 37719788 - 37719838
Alignment:
Q  115 tctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  37719788 tctcttgtgagccgtctctaaaaccctagtttcttctccttcatccaccaa 37719838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 23766676 - 23766729
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||| ||||||| |||| |||||||||||| |||||||||||||    
T  23766676 ttctctcttgtgagtcgtcacaaaaactctagtttcttctacttcatccaccaa 23766729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 14115975 - 14115919
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  |||| |||||| |||||| ||||||||||||    
T  14115975 cctttctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaa 14115919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 36545963 - 36545908
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||    
T  36545963 cctttctctcttgtga-ccgtcactgaaatcctagtttcttctccttcatccaccaa 36545908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 31874026 - 31874067
Alignment:
Q  119 ttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  31874026 ttgtgagccgtcac-caaaccctagtttcttctccttcatcca 31874067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 9270032 - 9270066
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  9270032 tttgacccaaaatcacccctctaactcgtttttct 9270066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 9992676 - 9992710
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  9992676 tttgacccaaaatcacccctctaactcgtttttct 9992710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 9992596 - 9992645
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcat 158  Q
    ||||||||||||||||||||||||  | ||| || |||||||||||||||    
T  9992596 cctttctctcttgtgagccgtcaccaagaccataatttcttctccttcat 9992645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 31874095 - 31874128
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttc 199  Q
    |||||||||||||| |||||||||||||||||||    
T  31874095 tttgacccaaaatcacccctctaactcgtttttc 31874128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 32061728 - 32061781
Alignment:
Q  113 tctctcttgtgagccgtca-cacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||| ||||||||||||| |  |||||||| ||||||||||||||||||||||    
T  32061728 tctcttttgtgagccgtcagctgaaaccctaatttcttctccttcatccaccaa 32061781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 7281308 - 7281260
Alignment:
Q  111 tttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatc 159  Q
    ||||| ||||||||||||||||  |||| |||||||||||||| |||||    
T  7281308 tttctttcttgtgagccgtcaccaaaactctagtttcttctccctcatc 7281260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 10042772 - 10042804
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgttttt 198  Q
    |||||||||||||| ||||||||||||||||||    
T  10042772 tttgacccaaaatcacccctctaactcgttttt 10042804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 12244403 - 12244351
Alignment:
Q  107 ttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatc 159  Q
    |||| ||||||||||||||||||||   ||| | |||||||||||||||||||    
T  12244403 ttcccttctctcttgtgagccgtcatcaaaatcttagtttcttctccttcatc 12244351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 44295243 - 44295283
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctc 152  Q
    |||||||| ||||||||||||  ||||||||||||||||||    
T  44295243 ttctctctagtgagccgtcaccaaaaccctagtttcttctc 44295283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 4564464 - 4564567
Alignment:
Q  91 cttatcttttattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaatttgacccaaaatctcccctctaac 190  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||          |||| ||||||||||    
T  4564464 cttatcttttattatttttctttctctcctgtgagtcgtcacacaaaccctagtttcttctccttcatccaccaa----------aatcacccctctaac 4564553  T
Q  191 tcgtttttctattt 204  Q
    ||||||||||||||    
T  4564554 tcgtttttctattt 4564567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 14717425 - 14717369
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  14717425 cctttctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaa 14717369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 15276610 - 15276519
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa----tttgacccaaaatctcccctctaactcgtttttct 200  Q
    ||||| ||||||||||||||  ||||| |||||| ||||||||||||||||||    |||||||||||||| ||| ||| ||||||||||||    
T  15276610 tctcttttgtgagccgtcaccaaaaccatagtttattctccttcatccaccaagaggtttgacccaaaatcacccatctcactcgtttttct 15276519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 30853966 - 30853910
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||    
T  30853966 cctttctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaa 30853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 22345092 - 22345043
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  22345092 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatcca 22345043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 37685275 - 37685223
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  37685275 ttctctcttgtgagccgtcacaaaaatcctagtttctt-tccttcatccaccaa 37685223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 37700243 - 37700295
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||    
T  37700243 ttctctcttgtgagccgtcacaaaaatcctagtttctt-tccttcatccaccaa 37700295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 20129230 - 20129284
Alignment:
Q  17 tcaagagtggagttgcatgcatagggccaaaaaacaagttcataatctgccatgt 71  Q
    ||||||||||||||||||||| || || ||||||||||| || ||||||||||||    
T  20129230 tcaagagtggagttgcatgcagagagcgaaaaaacaagtgcagaatctgccatgt 20129284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 23320451 - 23320489
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23320451 tttgacccaaaatcacccctctaactcgtttttctattt 23320489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 44562852 - 44562814
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  44562852 tttgacccaaaatcacccctctaactcgtttttctattt 44562814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 26199531 - 26199584
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||| ||||||  ||| | |||||||||||||||||||||||||    
T  26199531 ttctctcttgtgagtcgtcactaaaatcttagtttcttctccttcatccaccaa 26199584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 45658637 - 45658698
Alignment:
Q  100 tattattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||| ||| ||||| ||||||||||||| ||| | |||||||||||||||||| ||||||||    
T  45658637 tattttttccctttttctcttgtgagccatcataaaaaccctagtttcttctctttcatcca 45658698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 5832244 - 5832282
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  5832244 tttgaccctaaatcacccctctaactcgtttttctattt 5832282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 23257038 - 23257087
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatc 159  Q
    |||||||||| |||| | |||||  |||||||||||||||||||||||||    
T  23257038 ctttctctctcgtgaactgtcaccaaaaccctagtttcttctccttcatc 23257087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 28618528 - 28618585
Alignment:
Q  102 ttattttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatc 159  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  28618528 ttattttcctttctctcctgtgagccgtcacacaagccctagtttcttctccttcatc 28618585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 31645763 - 31645812
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  31645763 ttctctctagtgagccgtcaccaaaaccctagtttcttctccttcatcca 31645812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 19646237 - 19646186
Alignment:
Q  105 ttttcctttctctcttgtgagccgtcacacaaaccctagtttcttctccttc 156  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||| ||||||    
T  19646237 ttttcctttctctcttgtgagccgtcaccaaaatcctagtttcttatccttc 19646186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 18472902 - 18472849
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||| ||||||||||  |||| ||||||||||| ||||||||||||||    
T  18472902 ttctctcttgggagccgtcaccaaaactctagtttcttcaccttcatccaccaa 18472849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 34894098 - 34894047
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||||||||||||||||  ||   |||||||||||||||||||||||||||    
T  34894098 ctttctctcttgtgagccaacatcaaaaccctagtttcttctccttcatcca 34894047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 4070565 - 4070603
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  4070565 tttgacccaaaatcacccctctgactcgtttttctattt 4070603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 6887355 - 6887309
Alignment:
Q  115 tctcttgtgagccgtcacacaaaccctagtttcttctccttcatcca 161  Q
    ||||| ||||||||||||  |||| ||||||||||||||||||||||    
T  6887355 tctctagtgagccgtcaccaaaactctagtttcttctccttcatcca 6887309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 22397728 - 22397678
Alignment:
Q  112 ttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    |||||| ||||||||||||||  |||| ||| |||||||||||||||||||    
T  22397728 ttctcttttgtgagccgtcaccaaaactctaatttcttctccttcatccac 22397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 28618619 - 28618653
Alignment:
Q  170 acccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||| ||||||||||||||||||||||||    
T  28618619 acccaaaatcacccctctaactcgtttttctattt 28618653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 34894019 - 34893985
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  34894019 tttgacccaaaatcacccctctaactcgtttttct 34893985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 4070483 - 4070542
Alignment:
Q  106 tttcctttctctcttgtgagccgtcac-acaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||| ||| ||||||||| | |||| |||||||||||| |||||||||||||    
T  4070483 tttcctttctctcgtgtaagccgtcacaaaaaactctagtttcttct-cttcatccaccaa 4070542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 32574384 - 32574440
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  32574384 cctttctctcttgtgagccgtcaccaaaaccctattttcttctccttcatccaccaa 32574440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 16913263 - 16913315
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||||    
T  16913263 tctcttttgtgagccgtcaccaaaaccctagtttcttctccttcatccaccaa 16913315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 20844938 - 20844994
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||    
T  20844938 cctttctctcttgtgagccgtcaccaaaaccttagtttcttctcctttatctaccaa 20844994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 7049179 - 7049234
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||||||||||||||||||  ||||| || ||| ||||||||||||||||||    
T  7049179 ctttctctcttgtgagccgtcaccaaaaccataattttttctccttcatccaccaa 7049234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 19759799 - 19759837
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19759799 tttgacccaaaatcacccctctaactcgtttttctattt 19759837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 8633343 - 8633294
Alignment:
Q  113 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| ||||||    
T  8633343 tctctcttgtgagccgtcacaaaaatcctagtttcttcttctttatccac 8633294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 548968 - 548934
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  548968 tttgacccaaaatcacccctctaactcgtttttct 548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 20845019 - 20845053
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttct 200  Q
    |||||||||||||| ||||||||||||||||||||    
T  20845019 tttgacccaaaatcacccctctaactcgtttttct 20845053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 9819 - 9775
Alignment:
Q  121 gtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  9819 gtgagccgtcacaaaaaccctagtttcttctccttcatccaccaa 9775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 9751 - 9713
Alignment:
Q  166 tttgacccaaaatctcccctctaactcgtttttctattt 204  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  9751 tttgacccaaaatcactcctctaactcgtttttctattt 9713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 1274 - 1218
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    ||||||||||||||||||||||||  |||| |||||| |||||| ||||||||||||    
T  1274 cctttctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaa 1218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 12377 - 12321
Alignment:
Q  109 cctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||| |||||||||| ||||  ||| |||||||||||||||||||||||||||    
T  12377 cctttctcccttgtgagccatcaccaaaatcctagtttcttctccttcatccaccaa 12321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 712 - 767
Alignment:
Q  110 ctttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaa 165  Q
    |||||||| || ||||||||||   |||| ||||||||||||||||||||||||||    
T  712 ctttctctattatgagccgtcatcaaaactctagtttcttctccttcatccaccaa 767  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 244567 - 244618
Alignment:
Q  111 tttctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccac 162  Q
    ||||||||||||||||||||||  |||||  |||||||||| ||||||||||    
T  244567 tttctctcttgtgagccgtcaccaaaacctaagtttcttcttcttcatccac 244618  T

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