View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8023_low_10 (Length: 408)
Name: NF8023_low_10
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 13447078 - 13446681
Alignment:
| Q |
1 |
tagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447078 |
tagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgacattttggactcgacaagcctggtatgaatata |
13446979 |
T |
|
| Q |
101 |
ggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13446978 |
ggagttgttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaa |
13446879 |
T |
|
| Q |
201 |
aggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13446878 |
aggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttca |
13446779 |
T |
|
| Q |
301 |
ttatttcagaaattgataatgt----taatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
394 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13446778 |
ttatttcagaaattgataatgttaattaatcaagaaactaataatgtacaacattttataggctgcaacgagtactttgaatggcattattgacacag |
13446681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 13426418 - 13426027
Alignment:
| Q |
1 |
tagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatata |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
13426418 |
tagcttacctcttgatgttgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttcgtcattttcaactcgacaagcctggtatgaatata |
13426319 |
T |
|
| Q |
101 |
ggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaa |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||| ||||||| || |||| |
|
|
| T |
13426318 |
ggcgttgttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaa |
13426219 |
T |
|
| Q |
201 |
aggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttta |
300 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||| | |
|
|
| T |
13426218 |
aggaagcgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgattcatttgattgatttgcgaa-tttca |
13426120 |
T |
|
| Q |
301 |
ttatttcagaaattgataatgttaatcaagaaactaatattgtacaacgtttt-ataggctgcaacgagtactttgaatggcattattgacac |
392 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
13426119 |
ttatttcagaaatcgagaatgttaatcaagaaactaatattgtacaacgttttaataggctgcaatgggtactttgaatggtattatcgacac |
13426027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 13419527 - 13419135
Alignment:
| Q |
1 |
tagcttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatata |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13419527 |
tagcttacctcttgatgctgccggtcctcttctttgcgctggaatcacagtgtatagtcctcttcgacattttgaactcgacaagcctggtatgaatata |
13419428 |
T |
|
| Q |
101 |
ggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaa |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||| | || |||| |
|
|
| T |
13419427 |
ggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaa |
13419328 |
T |
|
| Q |
201 |
aggaagcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttta |
300 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||| || | |
|
|
| T |
13419327 |
aggaagcaatagaacacttgggagctgactcgtttctagtaagccgcgatcctgatcagatgcaggtatatgattcatttgattcatttgtgaa-ttaaa |
13419229 |
T |
|
| Q |
301 |
ttatttcagaaattgataatgttaatcaagaaactaatattgtacaacgttttataggctgcaacgagtactttgaatggcattattgacacag |
394 |
Q |
| |
|
||||| |||||||| |||| ||||||| |||||||||||||||||| ||| |||| |||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
13419228 |
atattttagaaattggcaatggtaatcaataaactaatattgtacaacatttcatagactgcaatgggtactttgaatggtattattgacacag |
13419135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 13454027 - 13453764
Alignment:
| Q |
5 |
ttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggag |
104 |
Q |
| |
|
||||||||||||| || | |||||| ||||| ||||| | || || |||||||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
13454027 |
ttacctcttgatgcagctgctcctctcctttgtgctgggataaccgtatatagtcctcttcgacattttggactcgacaagcctgatatgaatataggtg |
13453928 |
T |
|
| Q |
105 |
ttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaagga |
204 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||| || |||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
13453927 |
ttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaagga |
13453828 |
T |
|
| Q |
205 |
agcaatagaacacttaggagcagactcgtttctagtaagccgcgatccagaacagatgcaggta |
268 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||| ||||||| |||||| | |||||| ||||| |
|
|
| T |
13453827 |
agcattagaacacttacgagcggactcatttctaataagccgtgatccaaagcagatgaaggta |
13453764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 13413177 - 13412958
Alignment:
| Q |
6 |
tacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagt |
105 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| ||||| ||||| || |||||||||||| || |||||||||||| ||||||||| | ||||||| || |
|
|
| T |
13413177 |
tacctcttgaatttgctggtcctctcctttgtgctggtgtcaccgtatatagtcctcttcgattttttggactcgataagcctggtttacatataggtgt |
13413078 |
T |
|
| Q |
106 |
tgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaa |
205 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || || ||||||||||| |||||||| || ||||||||| |
|
|
| T |
13413077 |
tgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaa |
13412978 |
T |
|
| Q |
206 |
gcaatagaacacttaggagc |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13412977 |
gcaatagaacacttaggagc |
13412958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 13385424 - 13385623
Alignment:
| Q |
26 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| | |||||||||||||| |||||| | || | || ||||| ||||||||||| |||| |
|
|
| T |
13385424 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatactttggactcgacaaacctggtcttcatgtcggtgttgttggtcttggtgggcttg |
13385523 |
T |
|
| Q |
126 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
13385524 |
gtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc |
13385623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 13393676 - 13393851
Alignment:
| Q |
50 |
gtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttggtcatatggctgtgaaatttgcta |
149 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||| | |
|
|
| T |
13393676 |
gtgtatagtcctcttcgatattttggactcgacaagcctggtatgaatataggtattgttggtcttggtggacttggtcacttgggtgtgaagtttgcaa |
13393775 |
T |
|
| Q |
150 |
aagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||| || || || || || || |||||||||||| || ||||||| |
|
|
| T |
13393776 |
aagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagc |
13393851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 13389245 - 13389444
Alignment:
| Q |
26 |
cctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggacttg |
125 |
Q |
| |
|
||||| ||||| ||||| |||| ||||| |||||||||||| ||| ||||||||| || |||||| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
13389245 |
cctctcctttgtgctgggatcactgtgtacagtcctcttagatattatggactcgataaacctggtcttcgtataggtgttgttggtcttggtgggcttg |
13389344 |
T |
|
| Q |
126 |
gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc |
225 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| | || || || |||||||| || || || || || || ||||||||||||||||||||||| |
|
|
| T |
13389345 |
gtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc |
13389444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 13379055 - 13378835
Alignment:
| Q |
11 |
cttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtag |
110 |
Q |
| |
|
||||||| ||||| |||||| ||||| ||||| ||||||||||||| || | | |||||||||| | ||||| ||||| || ||||||| || || | |
|
|
| T |
13379055 |
cttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttg |
13378956 |
T |
|
| Q |
111 |
gtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaat |
210 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || || ||||| ||||||| ||| || ||||| | ||||| || ||||| || | |||||||| || |
|
|
| T |
13378955 |
gtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccat |
13378856 |
T |
|
| Q |
211 |
agaacacttaggagcagactc |
231 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
13378855 |
tgaacgcttaggagctgactc |
13378835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 13373266 - 13373039
Alignment:
| Q |
4 |
cttacctcttgatggtgccggtcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatatagga |
103 |
Q |
| |
|
|||||| ||||||| || | |||||||||||| || || ||||||| ||||| ||| | | | |||||||||| ||||||||||| | || | || |
|
|
| T |
13373266 |
cttaccacttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggtttacatgtgggt |
13373167 |
T |
|
| Q |
104 |
gttgtaggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaagg |
203 |
Q |
| |
|
|| || |||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| || || || || || || || ||||| || | |||| |
|
|
| T |
13373166 |
gtggttggtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaagg |
13373067 |
T |
|
| Q |
204 |
aagcaatagaacacttaggagcagactc |
231 |
Q |
| |
|
|||| || |||||||||||||| ||||| |
|
|
| T |
13373066 |
aagccattgaacacttaggagctgactc |
13373039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 47601325 - 47601119
Alignment:
| Q |
25 |
tcctcttctttgcgctggagtcacagtgtatagtcctcttagacattttggactcgacaagcctggtatgaatataggagttgtaggtcttggtggactt |
124 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| || ||||||||||||| || ||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
47601325 |
tcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggactt |
47601226 |
T |
|
| Q |
125 |
ggtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgactgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggag |
224 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| ||||||| |||| |||||||| |
|
|
| T |
47601225 |
ggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggag |
47601126 |
T |
|
| Q |
225 |
cagactc |
231 |
Q |
| |
|
| ||||| |
|
|
| T |
47601125 |
ctgactc |
47601119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 28430712 - 28430767
Alignment:
| Q |
110 |
ggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28430712 |
ggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
28430767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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