View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_11 (Length: 381)
Name: NF8023_low_11
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 47197965 - 47198315
Alignment:
| Q |
19 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
118 |
Q |
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| T |
47197965 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
47198064 |
T |
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| Q |
119 |
tcattgccatctgtatgcaggtcactactcaataattataatagcattaattattaataatgaatcatcttaatgcataatgcagccgaatcaatgttaa |
218 |
Q |
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| T |
47198065 |
tcattgccatctgtatgcaggtcactactcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgttaa |
47198164 |
T |
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| Q |
219 |
aatattaaaccaaatacatgaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtat |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198165 |
aatattaaaccaaatacataaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtat |
47198264 |
T |
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| Q |
319 |
tgttcagcactctgggatttcacaatgatgcttcactttactcatcagtga |
369 |
Q |
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| T |
47198265 |
tgttcagcactctgggatttcacaatgatgcttcactttactcatcagtga |
47198315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 47185083 - 47185211
Alignment:
| Q |
19 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| |||| |
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| T |
47185083 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttga |
47185182 |
T |
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| Q |
119 |
tcattgccatctgtatgcaggtcactact |
147 |
Q |
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| T |
47185183 |
taattgccatatgtatgcaggtaactact |
47185211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 47185672 - 47185776
Alignment:
| Q |
265 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
364 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
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| Q |
365 |
agtga |
369 |
Q |
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||||| |
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| T |
47185772 |
agtga |
47185776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
273 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
361 |
Q |
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||||||| ||| ||||||||||| || ||||||||||||||||| |||||| ||| | |||||| | ||||||||| |||||||||| |
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| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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