View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8023_low_12 (Length: 372)
Name: NF8023_low_12
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 2 - 353
Target Start/End: Complemental strand, 15956921 - 15956570
Alignment:
| Q |
2 |
gcatctccaataatatcagcattaacagtgaacccaagtaagagtacatcaccaatatacttactccctaggtttccaaacaaacctgaaagcnnnnnnn |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15956921 |
gcatctccaatgatatcagcattaacagtgaacccaagtaagagtacatcaccaatatacttactccctaggtttccaaacaaacctgaaagcaaaaaaa |
15956822 |
T |
|
| Q |
102 |
gagattggagaaaaccacttgaagtaccttcacaattgtggttgctccatgttggtaatgcctttgaagttaaacaagctcatgggaatttggaaataca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15956821 |
gagattggagaaaaccacttgaagtaccttcacaattgtggttgctccatgttggtaatgcctttgaagttaaacaagctcatgggaatttggaaataca |
15956722 |
T |
|
| Q |
202 |
aatacaagctagtgcttgctcttaccaatggttcaacttccgcaaattatttggtatgtatatagttttatatattgatacattcacttaaaatattaaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15956721 |
aatacaagctagtgcttgctcttaccaatggttcaacttccgcaaattatttggtatgtatatagttttatatattgatacattcacttaaaatattaaa |
15956622 |
T |
|
| Q |
302 |
acaaattaaaagtaatttagataactatcttaataaagattaaaagagttga |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15956621 |
acaaattaaaagtaatttagataactatcttaataaatattaaaagagttga |
15956570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University