View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_13 (Length: 334)
Name: NF8023_low_13
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 44574352 - 44574685
Alignment:
| Q |
1 |
gttaggagttgttgaaacattacaaaatggaggaatttgatggtttatccgttgagacaagacaaaagaaatttaagattaatgggtcagattcctttgt |
100 |
Q |
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| T |
44574352 |
gttaggagttgttgaaacattacaaaatggaggaatttgatggtttacccgttgagacaagacaaaagaaatttaagattaatgggtcagattcctttgt |
44574451 |
T |
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| Q |
101 |
gaataggcctttctagtgcttggacctatgttttgtccgttatattaggccaatgtgtctttgagctcaataagcatagaattttggtcctttgatcagt |
200 |
Q |
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| T |
44574452 |
gaataggcctttctagtgcttggacctatgttttgtccgttatattaggccaatgtgtctttgagctcaataagcatagaattttggtcctttgatcagt |
44574551 |
T |
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| Q |
201 |
tcagaacaattatcctagctcgtcattttatagtttaaagtcgtgtttgtatgatgtaaatacaaagaagatctttatttgagccatatcgcacagtaaa |
300 |
Q |
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|||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44574552 |
tcagaacaattaccctagctcgtcgttttatagtttagagtcgtgtttgtataatgtaaatacaaaaaagatctttatttgagccatatcgcacagtaaa |
44574651 |
T |
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| Q |
301 |
atataccttaaatattggagtttcaaattttagt |
334 |
Q |
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|||||||||||| ||| ||||||||||||||||| |
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| T |
44574652 |
atataccttaaacatttgagtttcaaattttagt |
44574685 |
T |
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