View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_14 (Length: 326)
Name: NF8023_low_14
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 34955686 - 34956013
Alignment:
| Q |
1 |
agcttaggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgaga |
100 |
Q |
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| T |
34955686 |
agcttaggtgacaatttctttccaaaagataaatggtgtacggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgaga |
34955785 |
T |
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| Q |
101 |
tgatcaagtttcctggaacctgcagagtgcaaaacagcttacgtttcggcataatatttaaaatac--agagaaaaataataggaagtcatatgccgtat |
198 |
Q |
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| T |
34955786 |
tgatcaagtttcctggaacctgcagagtgcaaaacagcttatgtttcggcataatatttaaaatacagagagaaaaataataggaagtcatatgccgtat |
34955885 |
T |
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| Q |
199 |
attatatcatttatttctgctgttataatattgacaactgaagcttctattataatgcaaaggaaaaattaaaaacaagaacaatgtaaaaaatcttggt |
298 |
Q |
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| T |
34955886 |
attatatcatttatttctgctgttataatattgacaactgaagcttctattataatgcaaaagaaaaattaaaaacaagaacaatgtaaaaaatcttggt |
34955985 |
T |
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| Q |
299 |
tcatactcacacctgaaaactaggaagc |
326 |
Q |
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| T |
34955986 |
tcatactcacacctgaaaactaggaagc |
34956013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 31391785 - 31391666
Alignment:
| Q |
5 |
taggtgacaatttctttccaaaagataaatggtgtatggcatgcgacatgttcatttgagaagcatcaaatgaatgggcatcggatcttgctgagatgat |
104 |
Q |
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| T |
31391785 |
taggtgtcactttttttccaaaagatagatggttgatgacatgtgacatgttcatttgagaagcatcaaatgaatgtgcatctgatctagctgagacaac |
31391686 |
T |
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| Q |
105 |
caagtttcctggaacctgca |
124 |
Q |
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| T |
31391685 |
caagcttcctggaacctgca |
31391666 |
T |
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