View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_15 (Length: 325)
Name: NF8023_low_15
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 30997352 - 30997645
Alignment:
| Q |
14 |
gacatcaaaagcataaaataaacatatttcacttcatgatgaccttctaatgtagcctttttcagattatcaaagtacagaaatattgcatcattccttc |
113 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30997352 |
gacatcaaaagcatagaataaacatatttcacttcatgatgaccct---atgtagcctttttcagattatcaaagtacagaaatattgcatcattccttc |
30997448 |
T |
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| Q |
114 |
acaataaataatctcaaaatgactactttcactacaacttatcaaaaatgtggnnnnnnnnncatcgatgaagcatgaatgtggaatcaaaacaacctta |
213 |
Q |
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| T |
30997449 |
acaataaataatctcaaaatgactactttcactacaacttatcaaaaatgtggtttctttttcatcgatgaagcatgaatgtggaatcaaagcaacctta |
30997548 |
T |
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| Q |
214 |
tctagtgacgcatgttcataaacataccgatctactgaagcgttaggaaaatctttccaacttaatttgattttgcataagtcaaccattgaaattg |
310 |
Q |
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|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30997549 |
tctaatgacgcatgttgataaacatatcgatctactgaagcgttaggaaaatctttccaacttaatttgattttgcataagtcaaccattgaaattg |
30997645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 306
Target Start/End: Original strand, 31001487 - 31001617
Alignment:
| Q |
176 |
catcgatgaagcatgaatgtggaatcaaaacaaccttatctagtgacgcatgttcataaacataccgatctactgaagcgttaggaaaatctttccaact |
275 |
Q |
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||||| |||| |||||||||||||||||| || ||||| |||||||||||||| |||||| || ||||| || || |||| |||||||||| ||||| |
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| T |
31001487 |
catcggtgaaccatgaatgtggaatcaaaggaaacttatatagtgacgcatgttgataaacgtaaagatctgctaaaatgttaagaaaatctttgcaact |
31001586 |
T |
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| Q |
276 |
taatttgattttgcataagtcaaccattgaa |
306 |
Q |
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| T |
31001587 |
caatttgattttgcataaatcaaccattgaa |
31001617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31001311 - 31001376
Alignment:
| Q |
16 |
catcaaaagcataaaataaacatatttcacttcatgatgaccttctaatgtagcctttttcagatt |
81 |
Q |
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| T |
31001311 |
catcaaaagcatagaataaacatatttagcttcatgatgaccctctaataaagcctttttcagatt |
31001376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 34304929 - 34304858
Alignment:
| Q |
16 |
catcaaaagcataaaataaacatatttcacttcatgatgaccttctaatgtagcctttttcagattatcaaa |
87 |
Q |
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| T |
34304929 |
catcaaaagcatagaatatacatatttagcttcatgatgaccccctaatgcagcatttttcagattgtcaaa |
34304858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 14573060 - 14572989
Alignment:
| Q |
16 |
catcaaaagcataaaataaacatatttcacttcatgatgaccttctaatgtagcctttttcagattatcaaa |
87 |
Q |
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| T |
14573060 |
catcaaaagcatagaataaacatatttcgcatcatgatgaccctctaatgcagccttcttcaaattctcaaa |
14572989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 50936161 - 50936207
Alignment:
| Q |
82 |
atcaaagtacagaaatattgcatcattccttcacaataaataatctc |
128 |
Q |
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| T |
50936161 |
atcaaagtactgaaatattgcaccattccttcacgataaataatctc |
50936207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 49666227 - 49666181
Alignment:
| Q |
82 |
atcaaagtacagaaatattgcatcattccttcacaataaataatctc |
128 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||| ||||||| |
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| T |
49666227 |
atcaaagtactgaaatattgcaccattccttcacgataagtaatctc |
49666181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 49666312 - 49666266
Alignment:
| Q |
16 |
catcaaaagcataaaataaacatatttcacttcatgatgaccttcta |
62 |
Q |
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| T |
49666312 |
catcaaaagcatagaataaacatatttggcttcatgatgaccctcta |
49666266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 50936076 - 50936122
Alignment:
| Q |
16 |
catcaaaagcataaaataaacatatttcacttcatgatgaccttcta |
62 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
50936076 |
catcaaaagcatagaataaacatatttggcttcatgatgaccctcta |
50936122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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