View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_18 (Length: 307)
Name: NF8023_low_18
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 3686481 - 3686194
Alignment:
| Q |
5 |
acaaaaacagtaaaactcatctaaaaagaggatgatgatgttatgtgaaattactaaaatattcctgcaaca---tggaggttacataagagctacataa |
101 |
Q |
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| T |
3686481 |
acaaaaacagtgaaactcatcaaaaaagaggatgatgatgttatatgaaattactaaaatattcctgcaacaatatggaggttacataagagctacataa |
3686382 |
T |
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| Q |
102 |
aaaggatctcaacctaccatttttcnnnnnnnnntgtttaaaagagaaaacaaaatgatctacctcttgatgtaatagtaacaaaagtctgccaaaatga |
201 |
Q |
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| T |
3686381 |
aaagggtctcaacctaccatttttcaaaaaaatatgtttaaaagagaaaacaaaatgatctacctcttgatgtaatagtaacaaaagtctgccaaaatga |
3686282 |
T |
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| Q |
202 |
aagactggaccaactctaatacttgaagaacgaccatccaaaaatagccatagccaaagaaaaatagatacctccctccactttcata |
289 |
Q |
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| T |
3686281 |
aagactggaccaactctaatacttgaagaacgaccatccaaaaatagccatagccaaagaaaaatagatacctccctccactttcata |
3686194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 3663441 - 3663376
Alignment:
| Q |
143 |
aagagaaaacaaaatgatctacctcttgatgtaatagtaacaaaagtctgccaaaatgaaagactg |
208 |
Q |
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| T |
3663441 |
aagagaaaacaaaataatgtacctcttgatgtaatagtaacaaaagtctgccaagatgaaagactg |
3663376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 3671597 - 3671534
Alignment:
| Q |
145 |
gagaaaacaaaatgatctacctcttgatgtaatagtaacaaaagtctgccaaaatgaaagactg |
208 |
Q |
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| T |
3671597 |
gagagaacaaaataatttacctcttgatgtaatagtaacaaaagtctgctaagatgaaagactg |
3671534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 289
Target Start/End: Complemental strand, 3678755 - 3678612
Alignment:
| Q |
146 |
agaaaacaaaatgatctacctcttgatgtaatagtaacaaaagtctgccaaaatgaaagactggaccaactctaatacttgaagaacgaccatccaaaaa |
245 |
Q |
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|||||||||||| | |||||||| || ||||||||||||||||||||||| ||||||||||| | || |||| || || | | |||||| ||| |
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| T |
3678755 |
agaaaacaaaatagtttacctcttcatataatagtaacaaaagtctgccaagatgaaagactgaatcacctctgttaaaagagctgccaacatccataaa |
3678656 |
T |
|
| Q |
246 |
tagccatagccaaagaaaaatagatacctccctccactttcata |
289 |
Q |
| |
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| T |
3678655 |
tagccatagccaaacaaaaatagatatttccctccagtttcata |
3678612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 36157904 - 36157964
Alignment:
| Q |
5 |
acaaaaacagtaaaactcatctaaaaagaggatgatgatgttatgtgaaattactaaaata |
65 |
Q |
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||||||||| | ||| ||||| ||||||||| ||||| ||| ||||||||||||||||||| |
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|
| T |
36157904 |
acaaaaacattgaaaatcatccaaaaagagggtgatggtgtgatgtgaaattactaaaata |
36157964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 21807415 - 21807384
Alignment:
| Q |
34 |
ggatgatgatgttatgtgaaattactaaaata |
65 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21807415 |
ggatgatgatgttatgtgaaattactaaaata |
21807384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 12164349 - 12164423
Alignment:
| Q |
31 |
agaggatgatgatgttatgtgaaattactaaaatattcctgcaacatggaggt-tacataagagctacataaaaa |
104 |
Q |
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||||| ||||| ||| |||||||||||||||||| ||||| |||||||||| |||||||||| | |||||||| |
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| T |
12164349 |
agagggtgatggtgtgatgtgaaattactaaaatgcccctgctacatggaggtgtacataagaggtgcataaaaa |
12164423 |
T |
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