View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_2 (Length: 578)
Name: NF8023_low_2
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Original strand, 13871094 - 13871558
Alignment:
| Q |
13 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13871094 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctc |
13871193 |
T |
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| Q |
113 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13871194 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaa |
13871293 |
T |
|
| Q |
213 |
gtcaacacttgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgag |
312 |
Q |
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| T |
13871294 |
gtcaacacttgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgag |
13871393 |
T |
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| Q |
313 |
actctgtgatgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttc |
395 |
Q |
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| T |
13871394 |
actctgtgatgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttc |
13871493 |
T |
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| Q |
396 |
ctcgccttcgtatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
460 |
Q |
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| T |
13871494 |
ctcgctttcatatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
13871558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Original strand, 14011219 - 14011683
Alignment:
| Q |
13 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14011219 |
aacctgtgtatgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctc |
14011318 |
T |
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| Q |
113 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaa |
212 |
Q |
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| T |
14011319 |
ttagaaggacaatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaa |
14011418 |
T |
|
| Q |
213 |
gtcaacacttgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgag |
312 |
Q |
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| T |
14011419 |
gtcaacacttgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgag |
14011518 |
T |
|
| Q |
313 |
actctgtgatgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctat-----------------ccttcttc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14011519 |
actctgtgatgtagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttc |
14011618 |
T |
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| Q |
396 |
ctcgccttcgtatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
460 |
Q |
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| T |
14011619 |
ctcgctttcatatgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
14011683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 462 - 524
Target Start/End: Original strand, 13872057 - 13872119
Alignment:
| Q |
462 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
524 |
Q |
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| T |
13872057 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
13872119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 462 - 524
Target Start/End: Original strand, 14012182 - 14012244
Alignment:
| Q |
462 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012182 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
14012244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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