View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_23 (Length: 251)
Name: NF8023_low_23
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7310013 - 7310255
Alignment:
| Q |
1 |
gtttcattattctcaagattatagcctgcccacaagttacaaaatgtagtacttggaacaatcagatctgtacaaaggaggtaattaacttgggaaagat |
100 |
Q |
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| T |
7310013 |
gtttcattattctcaagattatagcctgccaacaagttacaaaatgtagtgcttggaacaatcagatctgaacaaaggaagtaattaacttgggaaagat |
7310112 |
T |
|
| Q |
101 |
ggaatttgataatagagttttccccattctcaagtttccgaaactcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatg |
200 |
Q |
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| T |
7310113 |
ggaatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatg |
7310212 |
T |
|
| Q |
201 |
catcagactttgtgatcagatttatagaatattgatgtccatc |
243 |
Q |
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| T |
7310213 |
catcagactttgtgatcagatttatagaatattgttgtgcatc |
7310255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 7329857 - 7329734
Alignment:
| Q |
110 |
taatagagttttccccattctcaagtttccgaaactcttctaattcattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
209 |
Q |
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| T |
7329857 |
taatagagttttcctcattctcaagtttccaaagttcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgcatcagact |
7329759 |
T |
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| Q |
210 |
ttgtgatcagatttatagaatattg |
234 |
Q |
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| T |
7329758 |
ttgtgatcagatttatagaatattg |
7329734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 7300843 - 7300897
Alignment:
| Q |
155 |
cattttcagatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
209 |
Q |
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| T |
7300843 |
cattttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagact |
7300897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 13899003 - 13898963
Alignment:
| Q |
155 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
195 |
Q |
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| T |
13899003 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
13898963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 13569182 - 13569143
Alignment:
| Q |
156 |
attttcagatgcattagtaacatgaccctaaatcagaact |
195 |
Q |
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| T |
13569182 |
attttcatatgcattagtaacttgaccctaaatcagaact |
13569143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 24552759 - 24552799
Alignment:
| Q |
155 |
cattttcagatgcattagtaacatgaccctaaatcagaact |
195 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||| |
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| T |
24552759 |
cattttcatatgcattagtaacttgaccctaaatcagaact |
24552799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 23964039 - 23964003
Alignment:
| Q |
159 |
ttcagatgcattagtaacatgaccctaaatcagaact |
195 |
Q |
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|||||||||||||||||| ||| |||||||||||||| |
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| T |
23964039 |
ttcagatgcattagtaacttgagcctaaatcagaact |
23964003 |
T |
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