View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8023_low_28 (Length: 207)
Name: NF8023_low_28
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 26695179 - 26694994
Alignment:
| Q |
15 |
gacatcaacataaattctcaccttgctttgtatccgcaagctcctcttccgagtacacttgatcaagcttctgaaacatatatgttatgtaaccctcctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695179 |
gacatcaacataaattctcaccttgctttgtatccgcaagctcctcttccgagtacacttgatcaagcttctgaaacatatatgttatgtaaccctcctc |
26695080 |
T |
|
| Q |
115 |
agaacattatagaatcaacaactgtgggcaagtatccgccgcctttaaagcataagcgtcctgttgctattgccaatgatgatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26695079 |
agaacattatagaatcaacaactgtgggcaagtatccgccgcctttaaagcataagcgtcctgttgctattgccaatgatgatgtc |
26694994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University