View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8023_low_4 (Length: 502)
Name: NF8023_low_4
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_4 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0005 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 285442 - 285924
Alignment:
| Q |
19 |
acggtagacatggtgataaggagaagattatagacttcttgttggctggagactccaatggagagtgggtgccggtagttgcgattgttggaatgggagg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
285442 |
acggtagacatggtgataaggagaagattatagacttcttgttggctggagactccaatggagagtgggtgccggtagttgcgattgttggaacgggagg |
285541 |
T |
|
| Q |
119 |
ggtaggaaagactactcttgctcaaattttgttcaatgatgaacgggtgaggaaccattttcaatc------atgggcctcggtgtcagagacttcaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
285542 |
ggtaggaaagactactcttgctcaagttttgtacaatgatgaacgtgtgaggaaccattttcaatctagatcatgggcctcggtgtcagagacttcaaat |
285641 |
T |
|
| Q |
213 |
gtgaatgaaataaccagaaaagcttttgagtctttcactttgacgtattctaatatctcagacttgaatatactctaaatcaaacttaaggataggctgg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
285642 |
gtgaatgaaataaccagaaaagcttttgagtatttcactttgatgtattctaatatctcagacttgaatatactccaaatcaaacttaaggatagactgg |
285741 |
T |
|
| Q |
313 |
ccggacaaaggtttctacttgttcttgatgggttttggaatgagaactttcttgactgggatatctttcaaagactctttctatcaggaaactatggtag |
412 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
285742 |
acggacaaaggtttctacttgttctggatgggttttggaatgagaactttcttgactgggatatcttccaaagaccctttctatcaggaaactatggtag |
285841 |
T |
|
| Q |
413 |
tagaatcattgtcacaacgcgtagtcaaagtgttgcaacattgatcggttctgatttaaatcattccctctcgcattcatctc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
285842 |
cagaatcattgtcacaacgcgtagtcaaagttttgcaacattgatcggtgctgatttaaatcattccctctcgcatttatctc |
285924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 101261 - 101050
Alignment:
| Q |
19 |
acggtagacatggtgataaggagaagattatagacttcttgttggctggagactccaatggagagtgggtgccggtagttgcgattgttggaatgggagg |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101261 |
acggtagacatggtgataaggag--gattatagacttcttgttggctggagactccaatggagagtgggtgccggtagttgcgattgttggaatgggagg |
101164 |
T |
|
| Q |
119 |
ggtaggaaagactactcttgctcaaattttgttcaatgatgaacgggtgaggaaccattttca------atcatgggcctcggtgtcagagacttcaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
101163 |
ggtaggaaagactactcttgctcaagttttgtacaatgatgaacgagtgaggaaccattttcaatctagatcatgggcctcggtgtcagagacttcaaat |
101064 |
T |
|
| Q |
213 |
gtgaatgaaataac |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
101063 |
gtgaatgaaataac |
101050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 495
Target Start/End: Complemental strand, 96881 - 96834
Alignment:
| Q |
448 |
caacattgatcggttctgatttaaatcattccctctcgcattcatctc |
495 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
96881 |
caacattgatcggagctgatttaattcattccctctcgcatttatctc |
96834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University