View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_5 (Length: 475)
Name: NF8023_low_5
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 34 - 466
Target Start/End: Original strand, 12200566 - 12200991
Alignment:
| Q |
34 |
tatatctcctaaaaaatgatatataaacaaaagaaattgattacattataaaatgaaataacttttcctcaaaaaactttatatcatggaataaaagaaa |
133 |
Q |
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| T |
12200566 |
tatatctcctaaaaaatgatatataaacaaaagaaattgattacattataaaatgaaataacttttcctcaaaaaacttcatatcatggaataaaagaaa |
12200665 |
T |
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| Q |
134 |
tatgaaaagaacttaacaattaatttaccttaaactaaattctttttaagacnnnnnnnnnnnnnntgacatcagatattatcgatccggatgactgtga |
233 |
Q |
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| T |
12200666 |
tatgaaaagaacttaacaattaatttaccttaaactaaattctttttaagacaaaaaaaa------tgacatcagttattatagatccggatgactatga |
12200759 |
T |
|
| Q |
234 |
tatgtgcttattcaacatcattttcaaagtagaatccagtgggatccaccaaaatttccagctagatccagtgctacacacaacagttcacacactttca |
333 |
Q |
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| T |
12200760 |
tatgtgcttattcaacatcattttcaaagtagaatccagtgggatccaccaaaatttccagctagatccagtgctacaca-aacagttcacactctttca |
12200858 |
T |
|
| Q |
334 |
caaaccatacacactccatcttagtgtctacataaacccccacacacaacctcaatattcaacaccattaaaccacatcactcacaaaaatctcatcact |
433 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12200859 |
caaaccatatacactccatcttagtgtctacataaacccccacacacaacctcaatattcaacaccattaaaccacaacactcacaaaaatctcatcact |
12200958 |
T |
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| Q |
434 |
caattttcctttttctcatttctgatgtccatc |
466 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
12200959 |
caattttcctttttctcatttctcatgtccatc |
12200991 |
T |
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