View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8023_low_6 (Length: 470)
Name: NF8023_low_6
Description: NF8023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8023_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 46008790 - 46009149
Alignment:
| Q |
1 |
actaaaacaatcatcaccaccacctgcagtcaacattgaagcacaagtttcaagagtttcaacaaagccacaaacacaagcaatgtcagagaaggaggac |
100 |
Q |
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| T |
46008790 |
actaaaacaatcatcaccaccacctgcagtcaacattgaagcacaagtttcaagagtttcaacaaagccacaaacacaagcaatgtcagagaaggaggac |
46008889 |
T |
|
| Q |
101 |
aaaaaatctttcccaaaatgcaagaaaacagcacatgggaatttgagtccacggataaacagaaacaagcctcctcagaaatcatcatcaatcagaaaca |
200 |
Q |
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| T |
46008890 |
aaaaaatctttcccaaaatgcaagaaaacagcacatgggaatttgagtccacggataaacagaaacaagcctcctcagaaatcatcatcaatcagaaaca |
46008989 |
T |
|
| Q |
201 |
agcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaatgtcccaaatcttctcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008990 |
agcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaatgtcccaaatcttctcca |
46009089 |
T |
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| Q |
301 |
tctcaaaacacacccttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
360 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009090 |
tctcaaaacacacctttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
46009149 |
T |
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