View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8024_low_1 (Length: 455)
Name: NF8024_low_1
Description: NF8024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8024_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 12359651 - 12359225
Alignment:
| Q |
14 |
aattttcttagacctccattgtgctgtccaacaatccaaatagttnnnnnnnttaggcggagtaatgaaagtaaatctcaaccaatgcatcaccttcacc |
113 |
Q |
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| T |
12359651 |
aattttcttagacctccattgtgctgtccaacaatccaaatagttaaaaaaattaggcggagtaatgaaagtaaatctcaaccaatgaatcaccttcacc |
12359552 |
T |
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| Q |
114 |
caaacctttgacactacctcacaatctaaaaagagacgagttgtgtttccaaaccttctccacacaatacacacgacgccccctcatccacccccaaaga |
213 |
Q |
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| T |
12359551 |
caaacctttgacactacctcacaatctaaaaagagacgagttgtgtttccaaaccttctccacacaatacacacgacgccccctcatccacccccaaagc |
12359452 |
T |
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| Q |
214 |
attttggaatgcaagatacttacgagttggcatccaatttagaaccaatgtccaataaaaagtgaccaattttgacggagttgggctcttccataaatat |
313 |
Q |
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|||| ||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
12359451 |
atttcggactgcaagatacttacgagttggcatccagtttagaagcaatg----------agtgaccaattttgacggagttgggctcttccatgaatat |
12359362 |
T |
|
| Q |
314 |
ttaaccaaaaaccttttcctccaaagtacttaaaatatcctaaagtggtcaaatttttctagcatttgatgtgtcgtcctcaccaaaaaatcagctctgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12359361 |
ttaaccaaaaaccttttcctccaaagtacttaaaatatcctaaagtggtcaaatttttctagcatttgatgtgtcgtcctcaccaaaaaatcagctctgt |
12359262 |
T |
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| Q |
414 |
ccgccgtccgccacccccatgaatccttcttctcact |
450 |
Q |
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| T |
12359261 |
ccgccgtccgccacccccatgaatcctccttctcact |
12359225 |
T |
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