View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8024_low_3 (Length: 419)
Name: NF8024_low_3
Description: NF8024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8024_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 164 - 402
Target Start/End: Complemental strand, 42325322 - 42325081
Alignment:
| Q |
164 |
tatttatatgcagggttcagagttcaat---cttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
260 |
Q |
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| T |
42325322 |
tatttatatgcagggttcagagttcaatattcttcgctaaacatatttcaccttgttagatatagtcagagatttgtttaattagtttcatattgtttaa |
42325223 |
T |
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| Q |
261 |
tctctcacaacatcaaacatccctctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
360 |
Q |
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| T |
42325222 |
tctctcacaacatcaaacatccatctctctaacaaactaacaactatcatttgtgctttattggaatggtattgacaaaacctaaatgactgagctaata |
42325123 |
T |
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| Q |
361 |
tatacatatttggttggtgtaggtgatgacagaccctgatgt |
402 |
Q |
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| T |
42325122 |
tatacatatttggttggtgtaggtgatgacagaccctgatgt |
42325081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 42325486 - 42325363
Alignment:
| Q |
19 |
acaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgttttctattatcagacatactca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325486 |
acaccaaacccaaagttgagattgatggtggtgacatgaggtccttctatacactggtatacatatattttttgttgttttctattatcagacatactca |
42325387 |
T |
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| Q |
119 |
cacaaacacgctatgtgtctgtcc |
142 |
Q |
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| T |
42325386 |
cacaaacacgctatgtgtctgtcc |
42325363 |
T |
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