View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8024_low_4 (Length: 410)
Name: NF8024_low_4
Description: NF8024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8024_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 25268552 - 25268169
Alignment:
| Q |
18 |
gtttctcctttgtaaaactaagatgatcaacacaactatttatccagttttattaatgaaaatatatttttgagattcctctcagaaaacactgtgggct |
117 |
Q |
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| T |
25268552 |
gtttctcctttgtaaaactaagatgataaccacaactatttatccagttttattaatgaaaatatattt--gagattcctctcagaaaacactgtgggct |
25268455 |
T |
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| Q |
118 |
taaaggttattttttagtggttttgtgagtgagaagagagaaacttgtaatnnnnnnnnnnnnntgagagacgttatacacatatactccctcatactca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25268454 |
taaaggttattttttagtggttttgtgagtgagaagagagaaacttgtaataaaaaatgaaaaatgagagacgttatacacatatactccctcatactca |
25268355 |
T |
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| Q |
218 |
tttatnnnnnnnn---catatttttgtacatttttctgaggaaacatatttttatacatttaaggataataatgacattaaatgtttgacnnnnnnntat |
314 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25268354 |
tttataaaaaaaaaaacatatttttgtacatttttctgagggaacatatttttatacatttaaggataataatgacattaaatgtttgacaaaagaatat |
25268255 |
T |
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| Q |
315 |
tgacattaaatgtgaaattaagtccgtagcagtatgcaaaattaactaagctccagtagtattttatggaccacggaacacaggtt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25268254 |
tgacattaaatgtgaaattaagtccgtagcagtatgcaaaattaactaagctccagtagtattttatggaccacggaccacaggtt |
25268169 |
T |
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