View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8024_low_5 (Length: 407)
Name: NF8024_low_5
Description: NF8024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8024_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 13041881 - 13042266
Alignment:
| Q |
8 |
ttggtggtgattgaacttctaatagtagcagcatctccttcattggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacctg |
107 |
Q |
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| T |
13041881 |
ttggtggtgattgaacttctaatagtagcagcatctccttcattggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacctg |
13041980 |
T |
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| Q |
108 |
gtcaggtatgtagtaagataggatgcttatattctcnnnnnnnnnnnngcatccaaaagtaattcccaggaaggatgctatcataaagtacatagataca |
207 |
Q |
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| T |
13041981 |
gtcaggtatgtagtaagataggatgcttatattctctctgtgtgtgtggcatccaaaagtaattcccaggaaggatgctatcataaagtacatagataca |
13042080 |
T |
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| Q |
208 |
cacaattcttaaggacatgtttttaataatagaatattcatgtataatgcttctgtggcctcaaattgcttggtaactttttgctttatgttatcaattt |
307 |
Q |
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| T |
13042081 |
cacaattcttaaggacatgtttttaataatagaatattcatgtataatgcttctgtggcctcaaattgcttggtaactttttgctttatgtt----attt |
13042176 |
T |
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| Q |
308 |
gaattttcacattaggaaaggttattatttattaatccagaatattttatttacaaataaaagacacaatcctgcttctctctgatgtcca |
398 |
Q |
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| T |
13042177 |
gaattttcacattaggaaaggttattatttattaatccagaatattttatttacaaataaaagacac-atcctgcttctctctgatgtcca |
13042266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 28376233 - 28376146
Alignment:
| Q |
18 |
ttgaacttctaatagtagcagcatctccttcattggtctccgatgatgtccgatgtttacttcgattcatggttgactgtccacaacc |
105 |
Q |
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| T |
28376233 |
ttgaacttttaatagtggcagctcctccttcgttggtctcagctgatgtccgatgcttacttggtttcatggttgactgtccacaacc |
28376146 |
T |
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