View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8025_high_6 (Length: 208)
Name: NF8025_high_6
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_high_6 |
 | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 38458179 - 38458352
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
38458179 |
tttgcttgaatgaatgtatgaaagaatgattgcaaaaaatagggaaaatagaggtttctgcctcttttggttgtatgcacagactgtgcgtgagttaact |
38458278 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagttgtgcagcgt |
190 |
Q |
| |
|
||| |||||| ||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
38458279 |
cacgcatgtgctaatgtctgcgtgagttaactcacgcagtgttttacacttgcactctttaagttgcgcagcgt |
38458352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 46273380 - 46273464
Alignment:
| Q |
63 |
aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcacacatgtgttaatgtctgtgtgagttaa |
147 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||| ||| ||||| ||||||||||||| |||||| ||||| || ||||||||| |
|
|
| T |
46273380 |
aaataaaggtttcagcctcttctggttttatgcacagagtgtgcgtgagttaactcacgcatgtgctaatggttgcgtgagttaa |
46273464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 13274860 - 13275021
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
13274860 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaatagggaaaatagaggtttctgcctcttctggttgtatgcacagactgtgcgtgagttaact |
13274959 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaa |
178 |
Q |
| |
|
||| |||||| ||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
13274960 |
cacgcatgtgctaatgtctgtgtgagttaactcacgcagtgttttacacttgcgctctttaa |
13275021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 2743717 - 2743819
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
2743717 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaatagggaaaatagaggtttctgcctcttctggttgtatgcacagactgtgcgtgagttaact |
2743816 |
T |
|
| Q |
118 |
cac |
120 |
Q |
| |
|
||| |
|
|
| T |
2743817 |
cac |
2743819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 21102098 - 21102208
Alignment:
| Q |
24 |
cttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcaca |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||| |||| | ||||||||| |||||||||||| |
|
|
| T |
21102098 |
cttgaatgaatgtatgaaagaaggattg-aaaaaatagggaaaatagaggtttctgcctcttttggtcttatgtacagactgtgcgtgagttaactcatg |
21102196 |
T |
|
| Q |
122 |
catgtgttaatg |
133 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
21102197 |
catgtgctaatg |
21102208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 26654350 - 26654407
Alignment:
| Q |
105 |
gcatgagttaactcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgtttt |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
26654350 |
gcatgagttaactcacacatgtgttaatggctgcgtgagttaactcacacagtgtttt |
26654407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 26925935 - 26925992
Alignment:
| Q |
105 |
gcatgagttaactcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgtttt |
161 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
26925935 |
gcatgagttaactcacacatgtgttaatggctgcgtgagttaactcacacagtgtttt |
26925992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 2743806 - 2743858
Alignment:
| Q |
139 |
gtgagttaa-tcacacagtgttttacacctgcactctttaagttgtgcagcgt |
190 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
2743806 |
gtgagttaactcacgcagtgttttacacttgcgctctttaagttgcgcagcgt |
2743858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 35018572 - 35018744
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
35018572 |
tttgcttgaatgaatgtatgaaagaaggattg-aaaaaatagggaaaatagaggtttctgcctcttctggttgtatgcacagattgtgcgtgagttaact |
35018670 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagtta-atcacacagtgttttacacctgcactctttaagttgtgcagcgt |
190 |
Q |
| |
|
||| |||||| ||||| ||||||||||| |||| ||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
35018671 |
cacgcatgtgctaatggttgtgtgagttagttcacgcagtgttttacacttgtgctctttaagttgcgcagcgt |
35018744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 7526898 - 7527062
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
7526898 |
tttgcttgaatgaatgtttgaaagaaggattg-aaaaaatagggaaaatagaggtttctgcctcttctgtttgtatgcacagactgtgtgtgagttaact |
7526996 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagttg |
182 |
Q |
| |
|
||| |||||| ||||| || ||||||||| |||||||||||||||||| ||| | || ||||||| |
|
|
| T |
7526997 |
cacgcatgtgctaatggttgcgtgagttaactcacacagtgttttacacttgcgcgctgtaagttg |
7527062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 4362182 - 4362077
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaat-aggaaa--tagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
4362182 |
tttgcttgaatgaatgtatgaaagaaggattgaaaaaaaagaggaaaaatagacgtttctgcctcttcttgttgtatgcacagactgtgcatgagttaac |
4362083 |
T |
|
| Q |
117 |
tcacac |
122 |
Q |
| |
|
| |||| |
|
|
| T |
4362082 |
ttacac |
4362077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 27982665 - 27982610
Alignment:
| Q |
108 |
tgagttaactcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgtttta |
162 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||| |||| |||||||||| |
|
|
| T |
27982665 |
tgagttaactcacacatgtgttaatggctgcgtaagttaactcacgcagtgtttta |
27982610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 11815927 - 11816073
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
11815927 |
tttgcttgaatgaatgtatgaaagaaggattg-aaaaaatagggaaaatagaggtttatgcctcttctggttgtatgcacagactgtgcgtgagttaact |
11816025 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttaca |
164 |
Q |
| |
|
||| |||||| ||||| ||| ||||||||| |||| |||||||||||| |
|
|
| T |
11816026 |
cacgcatgtgctaatggctgcgtgagttaactcacgcagtgttttaca |
11816073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 28036437 - 28036539
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||| |||||||||| |
|
|
| T |
28036437 |
tttgcttgaatgaatgtatgaaagaatgattgcaaaaaatagggaaaatagaggtttctgcctcttttggttgtatgcacaaactgtgcgtgagttaact |
28036536 |
T |
|
| Q |
118 |
cac |
120 |
Q |
| |
|
||| |
|
|
| T |
28036537 |
cac |
28036539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 31116402 - 31116304
Alignment:
| Q |
26 |
tgaatgaatgtatgaaagaaagattgcaaaaa-ataggaaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcacaca |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| || | ||||||||||||||||||||||| ||| | | || |||||| || |||||||||||||||| |
|
|
| T |
31116402 |
tgaatgaatgtatgaaagaaggattgaaaaattatggaaaatagaggtttctgcctcttctagttttttacacagactgggcgtgagttaactcacaca |
31116304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 27334433 - 27334556
Alignment:
| Q |
26 |
tgaatgaatgtatgaaagaaagattgcaaaaaataggaaa--tagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcacaca |
123 |
Q |
| |
|
|||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| |||||| | ||||| |||||| || ||||||||||||| | |
|
|
| T |
27334433 |
tgaatgaatgtatgaatgaaggaatacaaaatttaggaaaaatagaggtctctgccagttctggcttgatgcacagactgggcgtgagttaactcacgta |
27334532 |
T |
|
| Q |
124 |
tgtgttaatgtctgtgtgagttaa |
147 |
Q |
| |
|
||||||||| ||| ||||||||| |
|
|
| T |
27334533 |
tgtgttaattgctgcgtgagttaa |
27334556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 11805063 - 11805007
Alignment:
| Q |
105 |
gcatgagttaactcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttt |
160 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||| |||| |||||||| |
|
|
| T |
11805063 |
gcatgagttaactcacgcatgtgttaatcccagtgtgagttaagtcacgcagtgttt |
11805007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 5943912 - 5943756
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
5943912 |
tttgcttgaatgaatgtatgaaagaagaattgcaaaaaatagggaaaataaaggcttctgcctcttctggttgtatgcacagactgtgcgtgagttaacc |
5943813 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaatcacacagtgttttacacctgcactctttaagttg |
182 |
Q |
| |
|
||| |||||| ||||||||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5943812 |
cacgcatgtgctaatgtctgcgtgagtt--------agtgttttacacttgcactctttaagttg |
5943756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 37227193 - 37227109
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaat--aggaaatagaggtttctgcctcttctggttgtatgcagagact |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37227193 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaatagagaaaatagaggtttctgcctcttctggttgtatgcacagact |
37227109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 14097378 - 14097523
Alignment:
| Q |
22 |
tgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||| | |||||||||| | |||||||||||| |
|
|
| T |
14097378 |
tgcttcaatgaatgtatgaaagaaggattg-aaaaattagggaaaatagaggtttctgccagttctggcttgctgcagagactaagtgtgagttaactca |
14097476 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacac |
165 |
Q |
| |
|
|||||||||||||| || | |||||| || ||||||||||||||| |
|
|
| T |
14097477 |
cacatgtgttaatggctacgccagttaactcgcacagtgttttacac |
14097523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 49000600 - 49000781
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgc----------- |
106 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
49000600 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaatagggaaaatagaagtttctgcctcttctggttgtatacacagactgtgcgactcacgcat |
49000699 |
T |
|
| Q |
107 |
atgagttaactcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagttgtgcag |
187 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
49000700 |
gtgagttaactcacgcatgtgctaatgtctgcgtgagttaactcacacagtgttttacacttgcgctctttaagttgcgcag |
49000781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 33296704 - 33296577
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaataggaaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||| | | |||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
33296704 |
tttgcttgaatgattgtatgaaagaaggattgaaaaatagggaaaatagaggtttctgcctcttctggttgtatgcacagattgtgcgtgagttaactca |
33296605 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa |
147 |
Q |
| |
|
| |||||||||||||||| ||||||||| |
|
|
| T |
33296604 |
cgcatgtgttaatgtctgcgtgagttaa |
33296577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 28539728 - 28539610
Alignment:
| Q |
16 |
aatatttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagtt |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |||||||||||||| |||||| ||| ||||| |||||| |
|
|
| T |
28539728 |
aatatatgcttgaatgaatgtatgaaagaaggattg-aaaaattagggaaaatagaggtttatgcctcttctggttttatgcacagagtgtgcgtgagtt |
28539630 |
T |
|
| Q |
114 |
aactcacacatgtgttaatg |
133 |
Q |
| |
|
||||||| || ||| ||||| |
|
|
| T |
28539629 |
aactcacgcaagtgctaatg |
28539610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 44490522 - 44490609
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgc |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
44490522 |
tttgcttgaatgaatgtatagaagaaagattgcaaaaaattgggaaaatagaggtttatgcctcttct-gttgtatgcacagactgtgc |
44490609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 40552944 - 40552782
Alignment:
| Q |
28 |
aatgaatgtatgaaagaaagattgcaaaaaataggaaa---tagaggtttctgcctcttctggttgtatgcagagactgtgcatg-----agttaactca |
119 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||| |||||||| ||||| ||||||||| || |||||||||| |
|
|
| T |
40552944 |
aatgaatgtatgaaagatggattg-aaaaattaggaaaaaatagaggtttctgcctgttctggtttcatgcacagactgtgcgtgagttaagttaactca |
40552846 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagttg |
182 |
Q |
| |
|
| |||||| ||||| ||| | |||||| |||||||||||||||||| ||| || |||||||| |
|
|
| T |
40552845 |
cgcatgtgctaatggctgcgcaagttaactcacacagtgttttacacatgcgctagttaagttg |
40552782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 44490611 - 44490677
Alignment:
| Q |
122 |
catgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagttgtgcag |
187 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||| ||||||||||||| || |||||||||||| |||| |
|
|
| T |
44490611 |
catgtgctaatgtctgcgtgagttaactcacgcagtgttttacacttgtgctctttaagttgcgcag |
44490677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 48576945 - 48576803
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | |||||| || |
|
|
| T |
48576945 |
tttgctttaatgaatgtatgaaagaaggattgcaaaaaatagggaaaatagaggtttctgcctcttctggttgtatgcacagactgtccgtgagtt--ct |
48576848 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgtttt |
161 |
Q |
| |
|
||| |||||| |||||||| |||||||||| |||| ||||||||| |
|
|
| T |
48576847 |
cacgcatgtgctaatgtctatgtgagttaagtcacgcagtgtttt |
48576803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 32305120 - 32304957
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
32305120 |
tttgcttgaatgaatgtatgaaagaaggattg-aaaaaataggtaaaatagaggttgctgcctcttctggttgtatgcgcagactgtgcgtgagttaact |
32305022 |
T |
|
| Q |
118 |
cacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacacctgcactctttaagtt |
181 |
Q |
| |
|
||| |||||| ||||| || ||||||||| ||||| ||||||||||| ||| | ||||||||| |
|
|
| T |
32305021 |
cacgcatgtgctaatggctacgtgagttaactcacatcgtgttttacacttgcgcgctttaagtt |
32304957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 39466131 - 39466246
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
39466131 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaatagggaaaatagatgtttctgcctcttctggttgtatgcacagacggtgcgcgagttaact |
39466230 |
T |
|
| Q |
118 |
cacacatgtgttaatg |
133 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
39466231 |
cacgcatgtgttaatg |
39466246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 21284004 - 21283866
Alignment:
| Q |
22 |
tgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| |||| |||||||||||| |||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21284004 |
tgcttgaatgaatgtatgaaagaaggattggaaaat-tagggaaaatagaggtttatgcctcttctgg-------cacagactgtgcgtgagttaactca |
21283913 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacac |
165 |
Q |
| |
|
| |||||| ||||| ||| ||||||||| | || ||||||||||||| |
|
|
| T |
21283912 |
cgcatgtgctaatggctgcgtgagttaacttacgcagtgttttacac |
21283866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 42704575 - 42704491
Alignment:
| Q |
63 |
aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcacacatgtgttaatgtctgtgtgagttaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| ||| || ||||| || ||||||||| |
|
|
| T |
42704575 |
aaatagaggtttctgcctcttctggtttcatgcacagagtgtgcttgagttaactcacgcatatgctaatggttgcgtgagttaa |
42704491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 16458 - 16352
Alignment:
| Q |
22 |
tgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||| |
|
|
| T |
16458 |
tgcttgaatgaatgtatgaaagaaggattg-aaaaattagggaaaatagaggtttctgcctcttctggtttcatgcacagagtgtgcgtgagttaactca |
16360 |
T |
|
| Q |
120 |
cacatgtg |
127 |
Q |
| |
|
| |||||| |
|
|
| T |
16359 |
cgcatgtg |
16352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 256689 - 256579
Alignment:
| Q |
24 |
cttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcaca |
121 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||| |
|
|
| T |
256689 |
cttgaatgaatgtatgaaagaaggatta-aaaaattagggaaaatagaggtttctgcctcttctggtttcatgcacagattgtgcgtgagttaactcaca |
256591 |
T |
|
| Q |
122 |
catgtgttaatg |
133 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
256590 |
catgtgctaatg |
256579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 28762 - 28639
Alignment:
| Q |
24 |
cttgaatgaatgtatgaaagaaagattgcaaaaaataggaaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactcacaca |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||| || | |||| |||||| || |||||||||| || || |
|
|
| T |
28762 |
cttgaatgaatgtatgaaagaaggattgaaaattagggaaaatagaggtttctgcctcttctgattttttgcacagactgggcgtgagttaactaacgca |
28663 |
T |
|
| Q |
124 |
tgtgttaatgtctgtgtgagttaa |
147 |
Q |
| |
|
|||||||||| ||| || |||||| |
|
|
| T |
28662 |
tgtgttaatggctgcgttagttaa |
28639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 34437221 - 34437149
Alignment:
| Q |
20 |
tttgcttgaatgaatgtatgaaagaaagattgcaaaaaataggaaatagaggtttctgcctcttctggttgtatgca |
96 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
34437221 |
tttgcttgaatgaatgtatgaaagaaggattgcaaaaaat----aatagaggttcctgcctcttctggttgtatgca |
34437149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 6778499 - 6778642
Alignment:
| Q |
22 |
tgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||||||| ||||||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
6778499 |
tgcttgaatgtatgtatgaaagaaggattg-aaaaattagggaaaataaaggtttctacctcttctgaattcatgcagag--tgtgcgtgagttaactca |
6778595 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacac |
165 |
Q |
| |
|
| |||||| ||||| ||| ||||||||| |||| ||||| ||||||| |
|
|
| T |
6778596 |
cgcatgtgctaatggctgcgtgagttaactcacgcagtgctttacac |
6778642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 34437146 - 34437097
Alignment:
| Q |
117 |
tcacacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacac |
165 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34437146 |
tcacgcatgtgttaatgtctgtgtgagttaactcacacagtgttttacac |
34437097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 7721 - 7866
Alignment:
| Q |
22 |
tgcttgaatgaatgtatgaaagaaagattgcaaaaaatagg--aaatagaggtttctgcctcttctggttgtatgcagagactgtgcatgagttaactca |
119 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||| | |||||||||| | |||||||||||| |
|
|
| T |
7721 |
tgcttcaatgaatgtatgaaagaaggattg-aaaaattagggaaaatagaggtttctgccagttctggcttgctgcagagactaagtgtgagttaactca |
7819 |
T |
|
| Q |
120 |
cacatgtgttaatgtctgtgtgagttaa-tcacacagtgttttacac |
165 |
Q |
| |
|
|||||||||||||| || | |||||| || ||||||||||||||| |
|
|
| T |
7820 |
cacatgtgttaatggctacgccagttaactcgcacagtgttttacac |
7866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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