View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8025_low_1 (Length: 324)
Name: NF8025_low_1
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 2016723 - 2017027
Alignment:
| Q |
1 |
aataagaagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2016723 |
aataagaagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttc |
2016822 |
T |
|
| Q |
101 |
tcaggtggattgtaacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2016823 |
tcaggtggattgtaacatgtacttttgttgtccttacaggcataatttgcaagatccttctgagcttgctggcacgtttggttccctactgcccagtcca |
2016922 |
T |
|
| Q |
201 |
acaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaacnnnnnnngcataaccacaaggattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2016923 |
acaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgtaggctccattttcaacaaaaaaagcataaccacaaggattgaa |
2017022 |
T |
|
| Q |
301 |
gtcat |
305 |
Q |
| |
|
||||| |
|
|
| T |
2017023 |
gtcat |
2017027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 40566938 - 40566679
Alignment:
| Q |
14 |
aagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtggattgt |
113 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| |||||| |||| | || ||||| |
|
|
| T |
40566938 |
aagatatatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctgaattgt |
40566839 |
T |
|
| Q |
114 |
aacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
213 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| | |||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40566838 |
aacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaa |
40566739 |
T |
|
| Q |
214 |
ttccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaac |
273 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
40566738 |
ctccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaac |
40566679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 40600953 - 40600732
Alignment:
| Q |
17 |
aaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtgg---attgt |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||||||||||||| | |||| || || || |
|
|
| T |
40600953 |
aaatatataataccttggcaaccatgaacgagataaggatttccccgatatccatgagagcatctacaaaggtaaccagatctgtcagttgttgcatcgt |
40600854 |
T |
|
| Q |
114 |
aacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
213 |
Q |
| |
|
||||||||||||||| | ||||||| |||||| | | |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40600853 |
aacatgtacttttgtcggccttacacgcataagtggaaagatccttctgagcttgatgacaagtttggttccctactgcccagtccaacaacacaggaaa |
40600754 |
T |
|
| Q |
214 |
ttccttcttctccaacttgagg |
235 |
Q |
| |
|
||||| || | |||||||||| |
|
|
| T |
40600753 |
ctccttgttattcaacttgagg |
40600732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 40571632 - 40571408
Alignment:
| Q |
19 |
atatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggt---ggattgtaa |
115 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||| | | | |||| |||| |
|
|
| T |
40571632 |
atatataataccttcgcaaccattaatgaggtaaggatttccccgatatccaccaaagcatctgcaaaggtaaccagatttgttggttcctggatcgtaa |
40571533 |
T |
|
| Q |
116 |
catgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaatt |
215 |
Q |
| |
|
||||||||||| | | ||||||| |||||||| ||||| ||||||||||||| |||| |||||||| ||||||| ||||| ||||||||||||||| | |
|
|
| T |
40571532 |
catgtacttttctcggccttacatgcataattgaaaagattcttctgagcttgcaggcatgtttggtttcctactgtccagttcaacaacacaggaaact |
40571433 |
T |
|
| Q |
216 |
ccttcttctccaacttgaggaggtc |
240 |
Q |
| |
|
|||| |||| ||||||||||||||| |
|
|
| T |
40571432 |
ccttattcttcaacttgaggaggtc |
40571408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 40589927 - 40589620
Alignment:
| Q |
5 |
agaagaga-aaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctca |
103 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
40589927 |
agaagagataaaaaaatacatgataccttcgcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgatg |
40589828 |
T |
|
| Q |
104 |
g---gtggattgtaacatgtacttttgttgtccttacaggcata---atttggaagatccttctgagcttgctggcacgtttggttccctactgcccagt |
197 |
Q |
| |
|
| || || ||||||| ||||| ||| ||||||| ||||| | ||| ||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
40589827 |
gtttctgcatcgtaacatatacttctgtctgccttacaagcatacttacttgaaagatccttctgagcttgctgacaggtttggtttcctactgcccagt |
40589728 |
T |
|
| Q |
198 |
ccaacaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaacnnnnnnngcataaccacaaggatt |
297 |
Q |
| |
|
|||||||||||||||| | |||||||| | |||| ||||||| |||| | ||||| || || ||||||||||||| |||||||||| ||||| |
|
|
| T |
40589727 |
ccaacaacacaggaaagttcttcttctttagcttggggaggtctgtggttgcgaaaatgtagtctccattttcaacaataaaaacataaccacacggatt |
40589628 |
T |
|
| Q |
298 |
gaagtcat |
305 |
Q |
| |
|
|||||||| |
|
|
| T |
40589627 |
gaagtcat |
40589620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 40578067 - 40577848
Alignment:
| Q |
7 |
aagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcag-- |
104 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | | |
|
|
| T |
40578067 |
aagagaaaaaaaatatataataccttggcaaccattaatgaggtaaggatttccccgatatccatgagagcatctgcaaaggtaaccagatttgttggtt |
40577968 |
T |
|
| Q |
105 |
-gtggattgtaacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaaca |
203 |
Q |
| |
|
|| | ||||||||||||||| || ||||||| |||||||| | | ||| ||||||||||||| |||| ||||| || |||||| ||||||||||| |
|
|
| T |
40577967 |
cctgtttcgtaacatgtacttttaatggccttacaagcataattggaatgattcttctgagcttgcaggcatgtttgatttcctactttccagtccaaca |
40577868 |
T |
|
| Q |
204 |
acacaggaaattccttcttc |
223 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
40577867 |
acacaggaaactccttcttc |
40577848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 40596312 - 40596122
Alignment:
| Q |
26 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtgg---attgtaacatgtac |
122 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||| |||||||| ||||||||| |||||||||||||| | || ||| || |||||| ||| |
|
|
| T |
40596312 |
ataccttggcagccatggttgaggtaaggattaccccaatatccatccctgcatctgcagaggtaaccagatttgtgagttggtgcatcataacatttac |
40596213 |
T |
|
| Q |
123 |
ttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
213 |
Q |
| |
|
|||||| ||||||| |||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40596212 |
ttttgtctgccttacatgcataagtggaaagatccttccgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
40596122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University