View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8025_low_2 (Length: 323)
Name: NF8025_low_2
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 20202877 - 20202556
Alignment:
| Q |
1 |
tgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaaccaatgnnnnnnnnnnnn----atgcaattattt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
20202877 |
tgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaatcaatgtctctctctctctctcatgcaattattt |
20202778 |
T |
|
| Q |
97 |
tggaaaaattgcaggaagnnnnnnnttatggatatatcttagacgctatttcattgtcgccttgacaatttcccatcttcatcatcccaacactctacac |
196 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202777 |
tggaaaaattgcaggaagaaaaaaattatggatatatcttagacgctatttcattgtcgccttgacaatttcccatcttcatcatcccaacactctacac |
20202678 |
T |
|
| Q |
197 |
cacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccctaaaaacacgcccatccatcaaatgcctctc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202677 |
cacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccctaaaaacacgcccatccatcaaatgcctctc |
20202578 |
T |
|
| Q |
297 |
accgacagaactccaaactcga |
318 |
Q |
| |
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|||||||||||| ||| ||||| |
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| T |
20202577 |
accgacagaacttcaagctcga |
20202556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 22096900 - 22096579
Alignment:
| Q |
1 |
tgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaaccaatgnnnnnnnnnnnn----atgcaattattt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
22096900 |
tgttacttaagttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaatcaatgtctctctctctctctcatgcaattattt |
22096801 |
T |
|
| Q |
97 |
tggaaaaattgcaggaagnnnnnnnttatggatatatcttagacgctatttcattgtcgccttgacaatttcccatcttcatcatcccaacactctacac |
196 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096800 |
tggaaaaattgcaggaagaaaaaaattatggatatatcttagacgctatttcattgtcgccttgacaatttcccatcttcatcatcccaacactctacac |
22096701 |
T |
|
| Q |
197 |
cacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccctaaaaacacgcccatccatcaaatgcctctc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22096700 |
cacgccaacagccccgtcccagcctcattacaaaccctatccccacaaattcatcaaacccaacttccctaaaaacacgcccatccatcaaatgcctctc |
22096601 |
T |
|
| Q |
297 |
accgacagaactccaaactcga |
318 |
Q |
| |
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|||||||||||| ||| ||||| |
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| T |
22096600 |
accgacagaacttcaagctcga |
22096579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 39607592 - 39607650
Alignment:
| Q |
10 |
agttgtttcatctctggcctcaaacctgaaatccaaagagaggtccaagctttccaacc |
68 |
Q |
| |
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||||| ||||||||||| |||||||| ||||| | ||||||||| |||||||| ||||| |
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| T |
39607592 |
agttgcttcatctctggtctcaaaccagaaattcgaagagaggtacaagcttttcaacc |
39607650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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