View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8025_low_3 (Length: 278)
Name: NF8025_low_3
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40589661 - 40589429
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
40589661 |
caagctattctcgacacaccactgtttatggaagttcataatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaggattggttata |
40589562 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40589561 |
aactggctatgaaggagttgctacatagtgatcagtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataaagctcgtaattt |
40589462 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40589461 |
gttatcgaggatttgcagagggtgtgttccgac |
40589429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 479018 - 478741
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
479018 |
caagctattctcgacacaccactgtttgtggaagttcagaatgatagaatagtgtggatgatggaacgcaacgggaggtatactgttaagactgattata |
478919 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||| | ||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
478918 |
aactggctatgatggagttgttacacactgatcggtttcat-ttgaaggagaatgacataggatctggaaggtgaattcccctcataaagcacgtaattt |
478820 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgatttgt |
278 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||| |||||| | ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
478819 |
attatggaggatttacagggggtgtgttccgacgcgtctcttactacgatcacgtcatgtacaatgtgaggtgatttgt |
478741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 43318991 - 43318714
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
43318991 |
caagctattctcgacacaccactgtttgcggaagttcataatgatagaatagtgtggatgatggaacgcaacgggaggtatactgttaagactggttata |
43318892 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||| | ||||||||| |||||||||||||| ||||||| |||||||| |||||||||||||||| |||| | |||||| |
|
|
| T |
43318891 |
aactggctatgatggagttgttacacactgatcggttccatgttgaaggagaatgacatagaatctggaaggtgaattcccctcataaagcacataattt |
43318792 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgatttgt |
278 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||| |||| || ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43318791 |
attatggaggatttgcag-gggtgtgtttcgacgcatctccgactacgatcacgtcatgtacaatgtgaggtgatttgt |
43318714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7126446 - 7126720
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
7126446 |
caagctattctcgacacaccattgtttgcggaagtttagaatgatagaatagcgtggatgatggaacgtaacgggaggtataatgttaaaactggttata |
7126545 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||| ||||||| ||||||| |||| | ||||||||| |||||||| ||| |||| |||||||||| || |||||||||||||||| |||| |||||||| |
|
|
| T |
7126546 |
aactagctatgatggagttgttacacactgatcggttccatgttgagggatagtggcataaaatcttgaaggtgaattcccctcataaagcacgtaattt |
7126645 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || ||||| || | | |||||||||||||||||||| |||||| |
|
|
| T |
7126646 |
gttatggaggatttgcagggggtgtgttcctactcgtctccgacttcgatcacgacatgtacaatgtggggtgat |
7126720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8452012 - 8451815
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| |
|
|
| T |
8452012 |
caagctattcttgacacaccactgttttcggaagttcagaatgatagaataacgtggatgatggaacgtaacggaaggtatactgttaaaactgattata |
8451913 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataa-gctcgtaat |
197 |
Q |
| |
|
||||| |||||| | ||||| |||| | ||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
8451912 |
aactgactatgatgaagttgttacacaatgatcggttccatgttgaaggagagtggcatagaatctggaatgtgaattcccctcataaggctcgtaat |
8451815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 21371949 - 21371728
Alignment:
| Q |
53 |
cgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggaga |
152 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||||| | |||||||||||||||||| | ||||| |||| | ||||||||| |||| ||||||||| |
|
|
| T |
21371949 |
cgtggatgatgcaacgtaacggaaggtatactgttaagattagttataaactggctatgatgaagttggtacacactgatcggttccatgatgaaggaga |
21371850 |
T |
|
| Q |
153 |
gtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatca |
251 |
Q |
| |
|
||| |||| |||||||| |||||||| ||||||| |||| |||||||||||| ||||||||| | ||| |||| || | | ||||| || |||||||| |
|
|
| T |
21371849 |
gtggcatagaatctggaaggtgaatttccctcataaagcatgtaatttgttatggaggatttgtcg-gggggtgtcccaatgtgtctccgactacaatca |
21371751 |
T |
|
| Q |
252 |
cgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
21371750 |
caacatgtacaatgtgaggtgat |
21371728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 55734233 - 55734506
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
55734233 |
caagctattctcgacacaccactgtttgcggaagttcaaaatgatagaatagcatggatgatggaacgtaacgggaggtatactgttaagaatggttata |
55734332 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||| || ||||||||||||||||| ||||||||||||| ||||||||| || ||| ||||||||||||| |
|
|
| T |
55734333 |
aact-gctatgatggagttgctacatactgatcgattccatgttgaaggagagtggcataaaatctggaaggtgaattctccccataaagctcgtaattt |
55734431 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
55734432 |
gttatggaagatttgcagagtgtgtgttccgacgtgtctccgattacaatcacgatatgtacaatgtgagatgat |
55734506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 5 - 265
Target Start/End: Original strand, 49950550 - 49950811
Alignment:
| Q |
5 |
ctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaact |
104 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || |||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||| | |
|
|
| T |
49950550 |
ctattctcgacacaccactgtttagggaagtccataatgatagaatagtgtggatgatggaacgtagcgggaggtatattgttaagactagttataaatt |
49950649 |
T |
|
| Q |
105 |
ggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgtta |
203 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || |||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
49950650 |
ggctatgatagagttgctacatactgatcgattccatgttgaaggagagtgacagagaatctggaaggtgaattcccctcataaagctcgtaatttgtta |
49950749 |
T |
|
| Q |
204 |
tcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatg |
265 |
Q |
| |
|
| ||| |||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
49950750 |
tggagaatttgcagagagtgtgttccgacgcgtctccggttacaatcacgacatgtacaatg |
49950811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 51260493 - 51260221
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
51260493 |
caagctattctcgacaggccactatttgcggaagttcataatgatagaatagcgtggatgatggaacgtagtgggaggtatactgttaagactgattata |
51260394 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |||||||||||||||||| || |||| |||||||| |||||| ||||||||| |||| | |||||| |
|
|
| T |
51260393 |
aactggctatgatggagttgttacataccgatcagtttcatgttgaaggagaatgtcatagaatctggaaggtgaactcccctcataaagcacataattt |
51260294 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
||||| |||||| ||||| |||||||||| || | ||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
51260293 |
gttatggaggatctgcagggggtgtgttctgatgcgtctccgactacaatcacgacatgtactatgtgaggtg |
51260221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 56063225 - 56063497
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
56063225 |
caagctattctcgacacgccactatctgtggaagttcataatgatagaatagcgtggatgatggaacgtagtgggaggtatactgttaagactggttata |
56063324 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||| ||||||| | ||||| |||||| ||| ||||||||||||| ||||| || | || |||||||| |||||| ||||||||| || | |||||||| |
|
|
| T |
56063325 |
aactcgctatgatgaagttgttacataccgataggtttcatgttgacggagaatggcttagaatctggaaggtgaactcccctcataaaacacgtaattt |
56063424 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
||||| |||||| ||||| |||||| || ||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
56063425 |
gttatggaggatctgcagggggtgtatttcgacgcgtctccgactacaatcacgacatgtacaatgtgaggtg |
56063497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 28425418 - 28425687
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28425418 |
caagctattctcgacacaccactgtttgcggaagttcagaatgatataatagcgtggatgatgaaacgtaacgggaggtatattgttaagactgattata |
28425517 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||| | |||||||| |||||||| | |||||| |||| ||||| || |||||||||||||||| |||| |||||||| |
|
|
| T |
28425518 |
aactggctatgatggagttgttacacacggatcggttccatgttgaggaagagtggcatagaatctagaaggtgaattcccctcataaagcacgtaattt |
28425617 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgag |
269 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || ||||| || | | |||| ||||||||||||||||| |
|
|
| T |
28425618 |
gttatggaggatttgcagggggtgtgttcctactcgtctccgacttcgatcaagacatgtacaatgtgag |
28425687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 28538747 - 28538480
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||||||||||||| |||| | ||||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
28538747 |
caagctactctcgacacaccactgtttgcggaagttcagaatgatataatagcatggatgatggaacataacgagaggtatactgttaagactggttata |
28538648 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||| |||||||||| ||||||||| |||||||| |||||||||||||||| |||| | |||||| |
|
|
| T |
28538647 |
tgctggctatgatggagttgctacatactgattggttccatgttgaag--cagtgacatagaatctggaaggtgaattcccctcataaagcacataattt |
28538550 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgag |
269 |
Q |
| |
|
||||| |||||| || || | ||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
28538549 |
gttatggaggatatgtagggtgtgtgttccgacgcaccttcgattacaatcaagacatgtacaatgtgag |
28538480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 55 - 274
Target Start/End: Complemental strand, 32577941 - 32577721
Alignment:
| Q |
55 |
tggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagt |
154 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| || | | ||||||||| |||||||| ||||||| |
|
|
| T |
32577941 |
tggatgatggaacgtaacgggagatatactgttaagactggttataaactggctatgatggagttgttatacactgatcggttccatgttgagggagagt |
32577842 |
T |
|
| Q |
155 |
gacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacg |
253 |
Q |
| |
|
|||||| ||||| || |||||||||||||||| || | ||||||||||||| ||||||||| || ||||||||||| || ||||| || | | |||||| |
|
|
| T |
32577841 |
gacatagaatctcgaaggtgaattcccctcataaaacacgtaatttgttatggaggatttgtagggggtgtgttcctactcgtctccgacttcgatcacg |
32577742 |
T |
|
| Q |
254 |
acatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32577741 |
acatgtacaatgtgaggtgat |
32577721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 2064082 - 2064350
Alignment:
| Q |
4 |
gctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaac |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
2064082 |
gctattctcgacacaccactatttgcagaagttcagaa-gatagaatcgcgtggacgatggaacgtgacgggaggtatactattaagacttattataaac |
2064180 |
T |
|
| Q |
104 |
tggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctc-ataagctcgtaatttgtt |
202 |
Q |
| |
|
||||||||| ||| | |||||||| |||||| || |||||||| ||||||||| ||| |||||||| ||||||||| |||| | |||||||| ||||||| |
|
|
| T |
2064181 |
tggctatgatggaatagctacatactgatcgattccatgttgatggagagtgatatagaatctggaaggtgaattctcctcaaaaagctcgttatttgtt |
2064280 |
T |
|
| Q |
203 |
atcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|| || |||||||||| |||||||||||| | || | |||||||||| ||||||||||||||| |||| |
|
|
| T |
2064281 |
atggatgatttgcaga--gtgtgttccgactcgattccggttacaatcacagcatgtacaatgtgagatgat |
2064350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 26423122 - 26422947
Alignment:
| Q |
5 |
ctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgtt-aagactggttataaac |
103 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
26423122 |
ctattctcgatacaccactgtttgcggaagttcagaatgatagaataacgtggatgatgaaacgtaacgggaggtatactgttaaagactcgttataaac |
26423023 |
T |
|
| Q |
104 |
tggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattc |
179 |
Q |
| |
|
||| ||||| ||||||| |||| | ||||||||| |||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
26423022 |
tggatatgatggagttgttacacactgatcggttccatgttgagggagagtgacataaaaactggaaggtgaattc |
26422947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 40360686 - 40360874
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaag-ttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttat |
99 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||| |||| |||||||||||| | ||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
40360686 |
caagctattctcgacacaccattgtttgcggaaggttcataatgatagaatatcatggatgatggaacgtaacgaaaggtatactgccaagactggttat |
40360785 |
T |
|
| Q |
100 |
aaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataa |
188 |
Q |
| |
|
||||| | ||||| ||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40360786 |
aaactagttatgatggagttgttacacattgatcggttccatgttgaaggagagtgacataaaatctggaaggtgaattcccctcataa |
40360874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 8387304 - 8387576
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| |||||||||||| | ||||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8387304 |
caagctattctcgacacgccactatttgcggaagttcataatgatagaatagcatggatgaaggaacgtagtgggaggtatactgttaagactggttata |
8387403 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||| |||| ||||||| |
|
|
| T |
8387404 |
aactggctatgatggagttgttacataccgatcggtttcatgttgaaggagaatgacatagaatctggaaggtgaactcccctcataaagcatgtaattt |
8387503 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
||||| |||||| ||||| |||||||||| |||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8387504 |
gttatggaggatatgcagggggtgtgttctgacgtgtctccgactacaatcacgacatgtacaatgtgaggtg |
8387576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 26295610 - 26295855
Alignment:
| Q |
30 |
ggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagt |
129 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
26295610 |
ggaagttcagaatgataaaatggcgtggatgatggaacataacgggagatacattgttaagactggttataaactggctatgatgaagttgctacatact |
26295709 |
T |
|
| Q |
130 |
gatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttc |
228 |
Q |
| |
|
||||| || |||||||||||| |||| ||||||||||||| ||||||| |||||||| |||| |||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
26295710 |
gatcgattccatgttgaaggatagtggcataaaatctggaaggtgaatgcccctcataaagcgcgtaatttattatggaggatttgcagagagtgtgttc |
26295809 |
T |
|
| Q |
229 |
cgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
26295810 |
cgacgcgtctccgattacaatcacgacatgtacaatgtgagctgat |
26295855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 20204185 - 20204437
Alignment:
| Q |
2 |
aagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataa |
101 |
Q |
| |
|
|||||||||||| ||||| | | ||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
20204185 |
aagctattctcggcacactattgtttgcggaagttcaaaatgatagaatcgcgtggatgatggaacgtaatgggaggtatactgttaagactggttataa |
20204284 |
T |
|
| Q |
102 |
actggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataa-gctcgtaatttg |
200 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||| ||||||||||||||||| |||| || |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
20204285 |
actggctatgatggagttgttacatactgatcgatttcatgttgaaggagaatgacgtagaatctggaaggtgaattcccctcataaagctcgtaatttg |
20204384 |
T |
|
| Q |
201 |
ttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacg |
253 |
Q |
| |
|
|||| ||||||||| |||| ||||||||| || | ||| | ||||||||||| |
|
|
| T |
20204385 |
ttatggaggatttgtagagagtgtgttccaacacggctccggttacaatcacg |
20204437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 25730074 - 25730336
Alignment:
| Q |
11 |
tcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctat |
110 |
Q |
| |
|
||||||||| ||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| ||||| |
|
|
| T |
25730074 |
tcgacacactactttttgcggaagttcagcatgatagaataacatggatgatggaacgtaacgggaggtatactgtcaagattggttataaactagctat |
25730173 |
T |
|
| Q |
111 |
gaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgagg |
209 |
Q |
| |
|
|| |||||| |||||| |||||||| ||||||||||||| ||| || | |||||||| |||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
25730174 |
gattgagttgttacataccgatcggttccatgttgaaggagcgtggcaaagaatctggaaggtgaattcccctcataaagctcgtaatttgttatggagg |
25730273 |
T |
|
| Q |
210 |
atttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
|||| ||| || |||||||||||| | | ||||||||||||||||||| |||||||||||| |
|
|
| T |
25730274 |
atttacaggggatgtgttccgacgcattttcgattacaatcacgacatgtgcaatgtgaggtg |
25730336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 22768182 - 22767947
Alignment:
| Q |
40 |
aatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttc |
139 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| ||||||| || ||||||||||||||| | ||||||| || | | ||||||||| | |
|
|
| T |
22768182 |
aatgatagaataatgtggatgatggaacgtaatgggaggtatacagttaagattgtttataaactggctataatggagttgttagacattgatcggttcc |
22768083 |
T |
|
| Q |
140 |
atgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtct |
238 |
Q |
| |
|
||||||| |||||||| |||| |||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||| || |||| |
|
|
| T |
22768082 |
atgttgagggagagtggcatagaatctggaaggtgaattcccctcataaagcacgtaatttgttatggaggatttgcatggggtgtgttcctactcgtct |
22767983 |
T |
|
| Q |
239 |
ctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|||| | | ||||||||||||||||||||||||||| |
|
|
| T |
22767982 |
ctgacttcgatcacgacatgtacaatgtgaggtgat |
22767947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 30223762 - 30223489
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||| |||| | |
|
|
| T |
30223762 |
caagctattctcaacacaccattgtttgcggaagttcagaatgaaagaatagagtggatgatggaacgtaacgaaaggtatactattaagacgggttgca |
30223663 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataag-ctcgtaattt |
199 |
Q |
| |
|
|| ||||||||| ||||||| |||| | |||| |||| |||||||| |||||||| || ||||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
30223662 |
aa-tggctatgatggagttgttacacactgattggttccatgttgacggagagtggtgtaggatctggaaggtgaatccccctcataaaactcgtaattt |
30223564 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| ||||||| ||||||||||||||| || | |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
30223563 |
gttatgaaggatttacagagggtgtgttccaacccgcctctgactacaatcacgacatgtacaatgtaaggtgat |
30223489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 27284829 - 27285033
Alignment:
| Q |
69 |
taacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctgg |
168 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
27284829 |
taacaggaggtatactcttaagactggttataaactggctaagatggagttgctacatactgatcgattccatattgaaggagagtggtataaaatctgg |
27284928 |
T |
|
| Q |
169 |
atggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtg |
267 |
Q |
| |
|
| ||||||| |||||||| |||| |||||||| || ||||||| | || ||||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
27284929 |
aaggtgaatgcccctcataaagcgcgtaatttagcatggaggatt--gatagagtgtgtttcgacgcgtctccgattacaatcacgacatgtacaatgtg |
27285026 |
T |
|
| Q |
268 |
aggtgat |
274 |
Q |
| |
|
|| |||| |
|
|
| T |
27285027 |
agctgat |
27285033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 9329565 - 9329291
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9329565 |
caagctattctcgacacactactttatgcggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtatactgttaagactggttata |
9329466 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||| | ||||||||| ||||||| |||||||| |||| ||||| || |||||||||||||||| || | |||||||| |
|
|
| T |
9329465 |
aactggctatgatggagttgttacacactgatcggttctatgttgagggagagtggcatagaatctcgaaggtgaattcccctcataaaacacgtaattt |
9329366 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| |||||||| ||| ||||||||||| || ||||| || | | ||||||||||||||||||||||||||| |
|
|
| T |
9329365 |
gttatggaggattttcagggggtgtgttcctacttgtctccgacttcgatcacgacatgtacaatgtgaggtgat |
9329291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 16096562 - 16096773
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
16096562 |
caagctattctcgacacaccattgtttacgaaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtatactgttaagagtggttaca |
16096661 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
||||| |||||| | |||||||||||| |||| || |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
16096662 |
aactgactatgatgaagttgctacataccgatcaattccatgttgaaggagagtgacatagaatctggaaggtgaattcccctcataaagctcgtaattt |
16096761 |
T |
|
| Q |
200 |
gttatcgaggat |
211 |
Q |
| |
|
|||| |||||| |
|
|
| T |
16096762 |
attatggaggat |
16096773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 1580837 - 1581112
Alignment:
| Q |
6 |
tattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactg |
105 |
Q |
| |
|
|||||| |||||||| || ||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
1580837 |
tattcttgacacacctctgtttgtggaagttcagaatgaaagaataacgtggatgatggaacgtaatgagaggtatactattaagattggttataaacta |
1580936 |
T |
|
| Q |
106 |
gctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagc------tcgtaatt |
198 |
Q |
| |
|
| ||||| ||||||||||||| |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||| | |
|
|
| T |
1580937 |
gttatgacagagttgctacatactgatcgattccatgttgaaggagaatgacataaaatctggaaggtgaattcccctcataaagcttgtaatcgtaact |
1581036 |
T |
|
| Q |
199 |
tgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|| ||| ||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
1581037 |
tgctatggaggatttgtagagagtgtgttccgacgctccttcgattacaatcacgacatgtacaatgtgagatgat |
1581112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 61 - 270
Target Start/End: Complemental strand, 29201766 - 29201556
Alignment:
| Q |
61 |
atggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacata |
160 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||||||||||||| | ||||||| ||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
29201766 |
atggaacgtaatgggaggtatattgttaagattggttataaactggctatcatggagttgttacccactgatcgacttcatgttgaatgagagtgacata |
29201667 |
T |
|
| Q |
161 |
aaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgt |
259 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||| ||| ||||||||||| ||||||||||||| | |||| || ||||||||||||||| |
|
|
| T |
29201666 |
gaatctggaaggtgaattcccctcataaagcacgtaatttgctatggaggatttgcatggggtgtgttccgatgcatctcagactacaatcacgacatgc |
29201567 |
T |
|
| Q |
260 |
acaatgtgagg |
270 |
Q |
| |
|
||||||||||| |
|
|
| T |
29201566 |
acaatgtgagg |
29201556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3746473 - 3746589
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
3746473 |
caagctattctcgacacaccattgtttgtggaagttcagaatgatagaatatcatggatgatggaacgtaacgggaggtatactgttaagactgcttaca |
3746572 |
T |
|
| Q |
101 |
aactggctatgaaggag |
117 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
3746573 |
aactggctatgatggag |
3746589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 22288592 - 22288736
Alignment:
| Q |
129 |
tgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataa-gctcgtaatttgttatcgaggatttgcagagggtgtgtt |
227 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| | |||||| ||||||||||| || ||||||||||||| ||| || || || ||||||||| |
|
|
| T |
22288592 |
tgatcggtttcatgttgaaggagaatgacatagaatctgaaaggtgaactcccctcataaagcacgtaatttgttatggagaatctgtagggggtgtgtt |
22288691 |
T |
|
| Q |
228 |
ccgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
22288692 |
ccgacgcgtctccgactacaatcacgacatgtacaatgtgaggtg |
22288736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 17876714 - 17876844
Alignment:
| Q |
40 |
aatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagac-tggttataaactggctatgaaggagttgctacatagtgatcggttt |
138 |
Q |
| |
|
||||||| |||||| |||| ||||||||| |||||||||||||| ||||||| |||||||||||| ||||||| ||||||| |||||| || || ||| |
|
|
| T |
17876714 |
aatgatataataacatggaagatggaacgcaacgggaggtatactattaagacctggttataaactagctatgatggagttgttacatatcgaacgattt |
17876813 |
T |
|
| Q |
139 |
catgttgaaggagagtgacataaaatctgga |
169 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |
|
|
| T |
17876814 |
catgttgaaggagagtgacatataatatgga |
17876844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 16097912 - 16097980
Alignment:
| Q |
206 |
gaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
16097912 |
gaggatttgcagagagtgtgttccgacgcatctccgattacaatcacgacatgtacaatgtgagatgat |
16097980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 29201831 - 29201780
Alignment:
| Q |
14 |
acacaccactatttatggaagttcagaatgatagaataacgtggatgatggaa |
66 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29201831 |
acacaccactattg-tggaagttcagaatgatagaatagcgcggatgatggaa |
29201780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39826819 - 39826545
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39826819 |
caagctattcttgacacaccactgtttgcggaagttcaaaatgatagaataacgtggatgatggaacgtaacgggaggtatactgttaagactggttata |
39826720 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|||||||||||| ||||||| |||| | |||| |||| |||||||| |||||||| |||| ||||| || |||||||||||||||| |||| |||||||| |
|
|
| T |
39826719 |
aactggctatgatggagttgttacacactgattggttccatgttgagggagagtggcatagaatctagaaggtgaattcccctcataaagcacgtaattt |
39826620 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| |||||||||| ||||||||||| || ||||| || | | ||||||| ||||||||||||||||||| |
|
|
| T |
39826619 |
gttatgcaggatttgcaaggggtgtgttcctactcgtctccgacttcgatcacgatatgtacaatgtgaggtgat |
39826545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 87782 - 88056
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||||| |||||||||||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
|
|
| T |
87782 |
caagctattctcgatacaccattgtttgcggaagttcataatgatagaataacatggatggtggaatgtaatgggaggtatactatcaatactggttata |
87881 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|| | ||||||| |||||||||||||| ||||||||| |||||||||| |||||| | | ||| |||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
87882 |
aaatagctatgatggagttgctacatactgatcggttccatgttgaagaagagtggaaaagaatttggaaggtgaattctcatcataaagctcgtaattt |
87981 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| |||||||||||| || |||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
87982 |
gttatggaggatttgcaggggatgtgttccgacgcgtctccgattacaatcacggcatgtacaatgtgaggtgat |
88056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 274
Target Start/End: Original strand, 20514774 - 20515018
Alignment:
| Q |
30 |
ggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagt |
129 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||| || ||||||| |||| || |
|
|
| T |
20514774 |
ggaagttcaaaatgatagaatagcatggatgatggaacgtaatgggaggtatactgttaagactgattataaacttgcta-gatggagttggtacaccgt |
20514872 |
T |
|
| Q |
130 |
gatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttc |
228 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| || | | ||||||||||| |||||||||||| |||||| ||| |
|
|
| T |
20514873 |
gatcggttccatgttgaaggagagtgacatagaatctggaaggtgaattcccctcataaaacacataatttgttatggaggatttgcagggggtgtattc |
20514972 |
T |
|
| Q |
229 |
cgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||| ||||| | || |||| | |||||||||||||||||||| |
|
|
| T |
20514973 |
cgacgcgtctccaactataatcgtggcatgtacaatgtgaggtgat |
20515018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 269
Target Start/End: Complemental strand, 12131839 - 12131675
Alignment:
| Q |
106 |
gctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataag-ctcgtaatttgttat |
204 |
Q |
| |
|
||||||| | ||||||| |||| |||||| || |||||||||||||||||||||| |||| ||| || |||||||| ||||||| ||||||||| ||||| |
|
|
| T |
12131839 |
gctatgatgaagttgctgcatactgatcgattccatgttgaaggagagtgacatagaatccggaaggagaattcccatcataaggctcgtaattagttat |
12131740 |
T |
|
| Q |
205 |
cgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgag |
269 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
12131739 |
ggaggatttgcagagagtgtgttctgacgcgtcttcggttacaatcacgacatgtacaatgtgag |
12131675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 87580 - 87734
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||||| |||||||||||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
|
|
| T |
87580 |
caagctattctcgatacaccattgtttgcggaagttcataatgatagaataacatggatggtggaatgtaatgggaggtatactatcaatactggttata |
87679 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtg |
155 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
87680 |
aactagctatgatggagttgctacatattgatcggttccatgttgaagaagagtg |
87734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 34696705 - 34696595
Alignment:
| Q |
162 |
aatctggatggtgaattcccctcataa-gctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgta |
260 |
Q |
| |
|
|||||| | |||||||||||||||||| || ||||| ||||||| ||||||||| || |||||| ||| ||| |||||| | |||||| || |||||| |
|
|
| T |
34696705 |
aatctgaaaggtgaattcccctcataaagcacgtaacttgttatggaggatttgtaggaggtgtgctcctacgcgtctctaactacaattgcggcatgta |
34696606 |
T |
|
| Q |
261 |
caatgtgaggt |
271 |
Q |
| |
|
||||||||||| |
|
|
| T |
34696605 |
caatgtgaggt |
34696595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 34719117 - 34719007
Alignment:
| Q |
162 |
aatctggatggtgaattcccctcataa-gctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgta |
260 |
Q |
| |
|
|||||| | |||||||||||||||||| || ||||| ||||||| ||||||||| || |||||| ||| ||| |||||| | |||||| || |||||| |
|
|
| T |
34719117 |
aatctgaaaggtgaattcccctcataaagcacgtaacttgttatggaggatttgtaggaggtgtgctcctacgcgtctctaactacaattgcggcatgta |
34719018 |
T |
|
| Q |
261 |
caatgtgaggt |
271 |
Q |
| |
|
||||||||||| |
|
|
| T |
34719017 |
caatgtgaggt |
34719007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 18346226 - 18346158
Alignment:
| Q |
210 |
atttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgatttgt |
278 |
Q |
| |
|
|||||| ||| || ||||| |||| ||||| |||||||||||||| || |||||||||| |||||||| |
|
|
| T |
18346226 |
atttgcggagagtttgttctgacgcgtctccgattacaatcacgatatatacaatgtgacatgatttgt |
18346158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 15606961 - 15606691
Alignment:
| Q |
5 |
ctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttataaact |
104 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| | |||| |||||||||||| | |
|
|
| T |
15606961 |
ctattctcgacaccccactgtttgcggaagttcagaatgataaaatagtgtggatgatggaacgtaatgggaggtatgctattaaaactggttataaatt |
15606862 |
T |
|
| Q |
105 |
ggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgtta |
203 |
Q |
| |
|
|||||||| ||||||| |||||| |||||| || ||||||||||||||||| |||| ||| |||| ||| |||||||||||| |||| ||||||||||| |
|
|
| T |
15606861 |
ggctatgatggagttgttacatactgatcgattccatgttgaaggagagtggcatagaatatggaaggtaaattcccctcataaagcatgtaatttgtta |
15606762 |
T |
|
| Q |
204 |
tcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
| |||||||||||| ||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
15606761 |
tggaggatttgcagggggtgtgttccaacgcgtctccgactacaatcacgacatgtacaatgtgaggtgat |
15606691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 29368999 - 29368725
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| ||| ||||||||||||| |||| ||||||||||| || ||||||| || |||| ||||||||| ||||| |
|
|
| T |
29368999 |
caagctattctcgacacaccattgtttgcggatgttcagaatgataaaatagcgtggatgatgaaatgtaacggtagatatattgttaagactaattata |
29368900 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||||| || ||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
29368899 |
aattggctatgatggagttgctacatactgatcgattccatgttgaaggagagtggcataaaatatggaaggtgaattcccctcataaagctcgtaattt |
29368800 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
29368799 |
attatggaggatttgcaaagagtgtgttccgacacgtcttcgattacaatcacgacatgtacaatgtgagatgat |
29368725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 19364900 - 19364626
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
19364900 |
caagctattctcgacacaccactgtttgcggaagttcaaaatgatagaataacatgaatgatggaacataacgggaggtatactgttaagactggttata |
19364801 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
||||||||| || |||||| ||||||| || | | || ||||||||||||||||| |||| |||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
19364800 |
aactggctaagatggagttactacatactggttgattccatgttgaaggagagtggcatagaatctggaaggtgaa----cctcataaagctcgtaattt |
19364705 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgatttgt |
278 |
Q |
| |
|
||||| ||||||||| ||| ||| ||| ||| ||||| ||||||| |||||||| | ||||||||| ||| |||| |
|
|
| T |
19364704 |
gttattgaggatttgaagatattgtattctgacacgtctccaattacaagcacgacatatgcaatgtgagatgacttgt |
19364626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11732609 - 11732346
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||||||||| ||||||| ||| ||| ||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
11732609 |
caagctattcccgacacatcacggtttgcggaaggtcagaatgatataatagcgtggatgatggaacgtaacggtaggtataatattaagactgactata |
11732510 |
T |
|
| Q |
101 |
aactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaattt |
199 |
Q |
| |
|
|| ||||||||| | |||||||||||| | ||| || || |||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
11732509 |
aattggctatgatgaagttgctacatactagtcgattccaagttgaaggagagtgacataaaatctggaaggtgaattccactcataaagcttgtaattt |
11732410 |
T |
|
| Q |
200 |
gttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaa |
263 |
Q |
| |
|
||||| |||||||| || || |||||||| | | ||||| |||||||| |||||||||||||| |
|
|
| T |
11732409 |
gttatggaggatttacaaagagtgtgttcttatgtgtctccgattacaagcacgacatgtacaa |
11732346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 54 - 274
Target Start/End: Complemental strand, 30803455 - 30803234
Alignment:
| Q |
54 |
gtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagag |
153 |
Q |
| |
|
||||| ||||| ||||||| | | |||||| | ||||| ||||||||||||| |||||| ||||||| | || ||||||||||||||||||||| ||||| |
|
|
| T |
30803455 |
gtggaagatgggacgtaacagtatgtatactggtaagaatggttataaactgactatgatggagttgttccacagtgatcggtttcatgttgaaagagag |
30803356 |
T |
|
| Q |
154 |
tgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcac |
252 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| || | | ||||||||||| |||||||||||| ||||||||| |||| ||||| || ||||||||| |
|
|
| T |
30803355 |
agacatagaatctggaaggtgaattcccctcataaaacacataatttgttatggaggatttgcagggggtgtgttatgacgtgtctccgactacaatcac |
30803256 |
T |
|
| Q |
253 |
gacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
30803255 |
gacatgtataatgtgaggtgat |
30803234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 274
Target Start/End: Complemental strand, 30802879 - 30802660
Alignment:
| Q |
54 |
gtggatgatggaacgtaacgggaggtataccgttaagactggttataaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagag |
153 |
Q |
| |
|
||||| |||||||||||| | |||||||| ||||| |||| ||||||||||||||||| ||||||| | || |||||| |||||||||||||| ||||| |
|
|
| T |
30802879 |
gtggaagatggaacgtaattgaaggtatactgttaaaactgattataaactggctatgatggagttgttccacagtgattggtttcatgttgaaagagag |
30802780 |
T |
|
| Q |
154 |
tgacataaaatctggatggtgaattcccctcat-aagctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcac |
252 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| || || | | |||||| |||| || ||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
30802779 |
tgtcatagaatctggaaggtgaattccccttataaaacacataattttttatggaaaatttgcaga--gtgtgttccgacacgtctctgactacaatcac |
30802682 |
T |
|
| Q |
253 |
gacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
30802681 |
gacatgtacaacgtgaggtgat |
30802660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 100 - 274
Target Start/End: Original strand, 53496379 - 53496554
Alignment:
| Q |
100 |
aaactggctatgaaggagttgctacatagtgatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcat-aagctcgtaatt |
198 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| || ||||||||||||||||| ||||||||||||| ||||||| |||||||| |||| ||||||| |
|
|
| T |
53496379 |
aaactggctatgatggagttgctacatactgatcgattccatgttgaaggagagtggcataaaatctggaaggtgaatgcccctcataaagcgcgtaatt |
53496478 |
T |
|
| Q |
199 |
tgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
53496479 |
tattatggaggatttgcagagagtgtgttccgacgcgtctccgattacaatcacgacatgtacaatgtgagctgat |
53496554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 55198972 - 55199012
Alignment:
| Q |
229 |
cgacgggtctctgattacaatcacgacatgtacaatgtgag |
269 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
55198972 |
cgacgcgtctccgactacaatcacgacatgtacaatgtgag |
55199012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 51112667 - 51112810
Alignment:
| Q |
130 |
gatcggtttcatgttgaaggagagtgacataaaatctggatggtgaattcccctcataa-gctcgtaatttgttatcgaggatttgcagagggtgtgttc |
228 |
Q |
| |
|
||||||||||||||||||| ||| || |||| |||||||| |||||| ||||||||||| || ||||||||||||| |||||| || || |||||||||| |
|
|
| T |
51112667 |
gatcggtttcatgttgaagaagaatggcatagaatctggaaggtgaactcccctcataaagcacgtaatttgttatggaggatctgtagggggtgtgttc |
51112766 |
T |
|
| Q |
229 |
cgacgggtctctgattacaatcacgacatgtacaatgtgaggtg |
272 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
51112767 |
cgacgcgtctccgactacaatcacgacatgtacaatgtgaggtg |
51112810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5608544 - 5608663
Alignment:
| Q |
1 |
caagctattctcgacacaccactatttatggaagttcagaatgatagaataacgtggatgatggaacgtaacgggaggtataccgttaagactggttata |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||| ||||||||| || ||||||| ||||| |
|
|
| T |
5608544 |
caagttattctcgacacaccactgtttgcggaagttcagaatgatagaataacatggatgatggaacggaacaggaggtatattgtcaagactgattata |
5608643 |
T |
|
| Q |
101 |
aactggctatgaaggagttg |
120 |
Q |
| |
|
|||| ||||||| ||||||| |
|
|
| T |
5608644 |
aactagctatgatggagttg |
5608663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 5608723 - 5608840
Alignment:
| Q |
162 |
aatctggatggtgaattcccctcataa-gctcgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgta |
260 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||| | ||||||||| || || ||||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
5608723 |
aatctggaaggtgaattcccctcataaagcttataatttgttgtggaggatttgtaggggatgtgttctgacgcgtctccgattacaatcatgacatgta |
5608822 |
T |
|
| Q |
261 |
caatgtgaggtgatttgt |
278 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5608823 |
caatgtgaggtgatttgt |
5608840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 36733108 - 36733190
Alignment:
| Q |
192 |
cgtaatttgttatcgaggatttgcagagggtgtgttccgacgggtctctgattacaatcacgacatgtacaatgtgaggtgat |
274 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||| |||| ||||| | | | ||||||| ||||||||||||||||||| |
|
|
| T |
36733108 |
cgtaatttgttatggaggatttgcaggagatgtgtttcgactcgtctccaacttcgatcacgatatgtacaatgtgaggtgat |
36733190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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