View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8025_low_4 (Length: 265)
Name: NF8025_low_4
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 34463385 - 34463628
Alignment:
| Q |
8 |
tggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaagaaaattatgcaaactcctacttgcaataattaacgttatatcac |
107 |
Q |
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| T |
34463385 |
tggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaa-aaaattatgcaaactcctacttgcaataattaacgttatatcac |
34463483 |
T |
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| Q |
108 |
atttgggacatcattgttatttttagtcggggcttcaaccctcaactttttaacttattaatttctttgacacttgaatcaaactagttgaggtaacaac |
207 |
Q |
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| T |
34463484 |
atttgggacatcattgttatttttagtcggggcttgaaccctcaactttttaacttattaatttctttgacacttgaatcaaactagttgaggtaacaat |
34463583 |
T |
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| Q |
208 |
tcgtcatatttgggacattgatattgtgaaaacctatgcttaatt |
252 |
Q |
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| T |
34463584 |
tcgtcacatttgggacattgatattgtgaaaaactatgcttaatt |
34463628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 34447110 - 34447215
Alignment:
| Q |
8 |
tggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaagaaaattatgcaaactcctacttgcaataattaacgttatatcac |
107 |
Q |
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| T |
34447110 |
tggtgttggaatttctaacccaggttattggggcatggtgagaa-taacaaaaaa-atactaatgcatactcctacttgaaataattaaggttgtgtcac |
34447207 |
T |
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| Q |
108 |
atttggga |
115 |
Q |
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| T |
34447208 |
atttggga |
34447215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 34436121 - 34436175
Alignment:
| Q |
8 |
tggtgttggagtctctaacccaggtttttggggcatggtgagaattaacaaaaaa |
62 |
Q |
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|||||||||| | ||||||||||||||| ||||||||| |||||||| |||||| |
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| T |
34436121 |
tggtgttggaatttctaacccaggttttaagggcatggtaagaattaaaaaaaaa |
34436175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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