View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8025_low_6 (Length: 247)
Name: NF8025_low_6
Description: NF8025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8025_low_6 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 6333485 - 6333264
Alignment:
| Q |
12 |
atgaacacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333485 |
atgaacacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtga |
6333386 |
T |
|
| Q |
112 |
cattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgcc |
211 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| || |
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| T |
6333385 |
cattgttgcattttcacatcaagagtttctttccttccaagatgatcattcttttacttggaagtgttgtttcagttttagctttgatgataatttctcc |
6333286 |
T |
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| Q |
212 |
gacaattgcttggatttatttg |
233 |
Q |
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||||||||||||||||||||| |
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| T |
6333285 |
tacaattgcttggatttatttg |
6333264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 6326008 - 6325787
Alignment:
| Q |
12 |
atgaacacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6326008 |
atgaacacaagtaagggaaagtctcaagctgatatcaaaacaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtaa |
6325909 |
T |
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| Q |
112 |
cattgttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgcc |
211 |
Q |
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| T |
6325908 |
caatgatacatattcacatcaagagattcattccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgcc |
6325809 |
T |
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| Q |
212 |
gacaattgcttggatttatttg |
233 |
Q |
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||||||||| |||||||||||| |
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| T |
6325808 |
gacaattgcatggatttatttg |
6325787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 233
Target Start/End: Complemental strand, 6346556 - 6346381
Alignment:
| Q |
58 |
tgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgat |
157 |
Q |
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| T |
6346556 |
tgatggctttggttttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggt |
6346457 |
T |
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| Q |
158 |
cattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttatttg |
233 |
Q |
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| T |
6346456 |
tattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttg |
6346381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 6242717 - 6242883
Alignment:
| Q |
57 |
atgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatga |
156 |
Q |
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||||||||||| |||||| ||| |||||||||||| |||||||||||||||||| |||| || ||||||||||| ||||||||||| | || |||| |
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| T |
6242717 |
atgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatgg |
6242816 |
T |
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| Q |
157 |
tcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttatttg |
233 |
Q |
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| T |
6242817 |
taattcttttacttggaagtgttatttcaattttagc----------atttcgccgacaattgcttggatttatttg |
6242883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 6219545 - 6219729
Alignment:
| Q |
49 |
acccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttc |
148 |
Q |
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|||| ||||||||| | ||||||||||||||| |||||| || | ||| |||||||||| | ||| |||| || ||||||||||||| |||||||| | |
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| T |
6219545 |
acccgattatgatgacattagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccatt |
6219644 |
T |
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| Q |
149 |
caagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttatttg |
233 |
Q |
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| T |
6219645 |
catgatggttattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttg |
6219729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 986 - 1101
Alignment:
| Q |
118 |
tgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaat |
217 |
Q |
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|||| ||||||||||| |||||||| || | || |||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
986 |
tgcagcttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaat |
1085 |
T |
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| Q |
218 |
tgcttggatttatttg |
233 |
Q |
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|||||||||||||||| |
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| T |
1086 |
tgcttggatttatttg |
1101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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