View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8026_high_13 (Length: 268)
Name: NF8026_high_13
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 53608944 - 53608693
Alignment:
| Q |
1 |
ttccattttcaacttatccatatgcttatattcatttattctttatttaaaatcatgagttcatgactcttaaataacctgattgattggcaaaaccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53608944 |
ttccattttcaacttatccatatgcttatattcatttattctttatttaaaatcatgagttcatgactcttaaatagcctgattgattggcaaaaccata |
53608845 |
T |
|
| Q |
101 |
tttagagttaactagttagttcaactaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53608844 |
tttagagttaactagttagttcaactaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttg |
53608745 |
T |
|
| Q |
201 |
atcttaatcaaatgacaaaatagtagtatacatacaacacaatgcaacatta |
252 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
53608744 |
atcttaatcaaatgacaaaatagtagtgtacatacaacacaatacaacatta |
53608693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 37223183 - 37223129
Alignment:
| Q |
93 |
aaaccatatttagagttaactagttagttcaactaagctaatggatagagattgg |
147 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
37223183 |
aaaccatttttagagttaactggttagttcatctaacctaatggatagagattgg |
37223129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 37210094 - 37210011
Alignment:
| Q |
125 |
ctaagctaatggatagagattggacaatttacatcttgataataacaaattgagagcttagaatctcaactgtttgatcttaat |
208 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||| ||||||||| || | || ||||||| ||| || |||||||||| |
|
|
| T |
37210094 |
ctaagctgatggatagagattggacggttcacatcttgattataacaaatcgaaaactcagaatcttaaccgtatgatcttaat |
37210011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University