View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8026_high_14 (Length: 266)
Name: NF8026_high_14
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_high_14 |
 | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 129008 - 129262
Alignment:
| Q |
1 |
agttgcaacacagtttgtgttctgtttccaaaagaggtgaagtgcagatagtaagtctttcaaaaggtagtttatgtgaaattgttgttactaagttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
129008 |
agttgcaacacagtttgtgttctgtttccaaaagaggtgaagtgcagatagtgagcctttcaaaaggtagtttatgtgaaattgttgttactaacttgta |
129107 |
T |
|
| Q |
101 |
agcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
129108 |
agcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattattt |
129207 |
T |
|
| Q |
201 |
ttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
129208 |
ttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
129262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 215328 - 215562
Alignment:
| Q |
20 |
ttctgtttccaaaagaggtgaagtgcagatagtaagtctttcaaaaggtagtttatgtgaaattgttgttactaagttgtaagcaaattcggatcctaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
215328 |
ttctgtttccaaaagaggtgaagtgcaggtagtaagcctttcaaaaggtagtttatgtgaaattgttgttactaagttgtaagcaaattcggatcctaac |
215427 |
T |
|
| Q |
120 |
ccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttcaaatgtaaatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
215428 |
ccatcagctcgcgtttatcatattggctttgtattttggaggtat-tttcagtttttctatttctagagttgcgattatttttatgttcaaatgtaaatt |
215526 |
T |
|
| Q |
220 |
taacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
215527 |
taacatctttgcttagttcaaattcgtagggtgtat |
215562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 80235 - 80485
Alignment:
| Q |
13 |
gtttgtgttctgtttccaaaagaggtgaagtgcagatagtaagtctttcaaaaggtagttt---------atgtgaaattgttgttactaagttgtaagc |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||| ||| ||||||||| ||||| |
|
|
| T |
80235 |
gtttgtgttctgttcccaaaagaggtgaagggaagatagtaagcctttcaaaaggtagtttttgtggtttatgtgaaattcttgctactaagttttaagc |
80334 |
T |
|
| Q |
104 |
aaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattattttta |
203 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
80335 |
aaattcggatcccaacccatcaactcgcatttatcatat-ggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattattttta |
80433 |
T |
|
| Q |
204 |
tgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
|||| ||| || |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
80434 |
agttcgaatctacttttaacatctttgctttgttcaaattcatagggtgtat |
80485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 13600460 - 13600605
Alignment:
| Q |
110 |
ggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13600460 |
ggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttca |
13600559 |
T |
|
| Q |
210 |
aatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13600560 |
aatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
13600605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 71 - 255
Target Start/End: Complemental strand, 19155063 - 19154880
Alignment:
| Q |
71 |
tttatgtgaaattgttgttactaagttgtaagcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttca |
170 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19155063 |
tttacgtgaaattcttgttactaagttttaagcaaattcggattctaacccatcaactcgcgtttatcatat-ggctttgtattttggaggtatgtttca |
19154965 |
T |
|
| Q |
171 |
gtttttctatttctagagttgcgattatttttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
19154964 |
gtttttctatttatagaggtttcattatttttatgttcgaatgtaaatttaacatctttgctttgttcaatttcgttgggtgtat |
19154880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 13483881 - 13484060
Alignment:
| Q |
79 |
aaattgttgttactaagttgtaagcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttct |
178 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||| || |||||| ||||||||| |||| ||||||||||| |||||||||||| ||||||| | |
|
|
| T |
13483881 |
aaattgttgttaataagtcgtaagcaaatttggatcccaaaccatcaactcgcgtttgtcat-ctggctttgtataacggaggtatgtttaagttttttt |
13483979 |
T |
|
| Q |
179 |
att---tctagagttgcgattattttta-tgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtat |
255 |
Q |
| |
|
|| | | ||||| |||| ||||| |||| |||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
13483980 |
tttttgttgaaagttgtcattagttttattgtttcaatgtaaatttaacatctttgctttgttcaatttcgtaggatgtat |
13484060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 16756947 - 16756895
Alignment:
| Q |
194 |
attatttttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgt |
246 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16756947 |
attatttttatgttcgaatgtaaatttaacatctttgctttgttcaaattcgt |
16756895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13480335 - 13480373
Alignment:
| Q |
1 |
agttgcaacacagtttgtgttctgtttccaaaagaggtg |
39 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
13480335 |
agttgcaacacagttagtgttctgttcccaaaagaggtg |
13480373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22267376 - 22267322
Alignment:
| Q |
1 |
agttgcaacacagtttgtgttctgtttccaaaagaggtgaagtgcagatagtaag |
55 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
22267376 |
agttgcaacacagtttgtgttctattcccaaaagaggtgaagtgaagatggtaag |
22267322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University