View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_high_19 (Length: 247)
Name: NF8026_high_19
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_high_19 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 26655445 - 26655676
Alignment:
| Q |
16 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggcnnnnnn |
115 |
Q |
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| T |
26655445 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggcaaaaag |
26655544 |
T |
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| Q |
116 |
nnnnnnnnnnntaatagttcactactatttagtgtcacattgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagt |
215 |
Q |
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| T |
26655545 |
aaaaagaaaaataatagttcactactatttagtgtcacattgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagt |
26655644 |
T |
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| Q |
216 |
atgtgattgggtccacacggctataacaagtg |
247 |
Q |
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| T |
26655645 |
atgtgattgggtccacacggctataacaagtg |
26655676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 26761416 - 26761647
Alignment:
| Q |
16 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggcnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26761416 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggcaaaaag |
26761515 |
T |
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| Q |
116 |
nnnnnnnnnnntaatagttcactactatttagtgtcacattgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagt |
215 |
Q |
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| T |
26761516 |
aaaaagaaaaataatagttcactactatttagtgtcacattgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagt |
26761615 |
T |
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| Q |
216 |
atgtgattgggtccacacggctataacaagtg |
247 |
Q |
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| T |
26761616 |
atgtgattgggtccacacggctataacaagtg |
26761647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 27338810 - 27338717
Alignment:
| Q |
16 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggc |
109 |
Q |
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| T |
27338810 |
acatcactctcaatggtatacaatgtcaaaatacaatattggaaatcatgtgtccaaataaaaaaattgaaaaccgtatattgtagcattaggc |
27338717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 27399550 - 27399457
Alignment:
| Q |
16 |
acatcactcttgatgatataaaatatcaaaatacagtatcggaaatcatgtttccaaataacaaaatagaaagccttatattgcagtattaggc |
109 |
Q |
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| T |
27399550 |
acatcactctcaatggtatacaatgtcaaaatacaatattggaaatcatgtgtccaaataaaaaaattgaaaaccgtatattgtagcattaggc |
27399457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 27586312 - 27586247
Alignment:
| Q |
173 |
gaagaaatttgcaagaataggtggaagtacaatgatatttagtatgtgattgggtccacacggctat |
239 |
Q |
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| T |
27586312 |
gaagaaattagcaagaagaggcggtagtacagttatatttagtatgtgatt-ggtccacacggctat |
27586247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 27605339 - 27605256
Alignment:
| Q |
155 |
ttgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagtatgtgattgggtccacacggctata |
240 |
Q |
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| T |
27605339 |
ttgaacattaatcgcattgaagaatttagcaagaagaagtgta-gtacagtgatatttagtatgtgatt-ggtccacacggctata |
27605256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 18699983 - 18699899
Alignment:
| Q |
155 |
ttgaacagttatcacattgaagaaatttgcaagaataggtggaagtacaatgatatttagtatgtgattgggtccacacggctata |
240 |
Q |
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|||||||| ||||||||||||||||| ||||||| | |||| |||| |||| |||||| | ||||||| |||||||||||||||| |
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| T |
18699983 |
ttgaacagcaatcacattgaagaaattagcaagaagatgtggcagtagaatgttatttaatgtgtgatt-ggtccacacggctata |
18699899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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