View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_high_21 (Length: 229)
Name: NF8026_high_21
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 39227623 - 39227421
Alignment:
| Q |
17 |
tagggaatcttagtggtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactctt |
116 |
Q |
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| T |
39227623 |
tagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactctt |
39227524 |
T |
|
| Q |
117 |
gaacttgttcatcaacaaactctatggtgaaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39227523 |
gaacttgttcatcaacaaactctatggtgaaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggt |
39227424 |
T |
|
| Q |
217 |
tct |
219 |
Q |
| |
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||| |
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| T |
39227423 |
tct |
39227421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 25546822 - 25546622
Alignment:
| Q |
17 |
tagggaatcttagtggtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactctt |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25546822 |
tagggaatcttagtagtttgaaatctcttgatatgtcaaacaatgagttaaatggaaacatacctaatgagttttcaaatcttcgcgaactcacactctt |
25546723 |
T |
|
| Q |
117 |
gaacttgttcatcaacaaactctatggtgaaattccatcnnnnnnnnctgagttaccaaatttggaagtgttaaagctttggcaaaacaacttcacaggt |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25546722 |
gaacttgttcatcaacaaactc--tggtgaaattccatcttttttttctgagttaccaaatttggaagtgttaaagctttggcataacaacttcacaggt |
25546625 |
T |
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| Q |
217 |
tct |
219 |
Q |
| |
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||| |
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| T |
25546624 |
tct |
25546622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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