View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8026_high_9 (Length: 303)

Name: NF8026_high_9
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8026_high_9
NF8026_high_9
[»] chr5 (18 HSPs)
chr5 (1-294)||(26072536-26072829)
chr5 (3-289)||(27166157-27166444)
chr5 (22-289)||(18089985-18090254)
chr5 (23-289)||(32228452-32228719)
chr5 (104-289)||(17106569-17106754)
chr5 (23-289)||(33169306-33169573)
chr5 (219-287)||(18148160-18148228)
chr5 (169-289)||(18359462-18359582)
chr5 (228-288)||(24407602-24407662)
chr5 (22-138)||(33385598-33385714)
chr5 (242-287)||(8300627-8300672)
chr5 (21-138)||(25857647-25857764)
chr5 (239-284)||(27766696-27766741)
chr5 (239-287)||(10774101-10774149)
chr5 (219-289)||(42927779-42927849)
chr5 (53-138)||(27766843-27766928)
chr5 (239-280)||(33385816-33385857)
chr5 (221-289)||(8941832-8941900)
[»] chr3 (23 HSPs)
chr3 (1-294)||(17098079-17098373)
chr3 (62-289)||(15312230-15312459)
chr3 (62-289)||(16178596-16178824)
chr3 (90-289)||(50651640-50651840)
chr3 (90-289)||(963455-963655)
chr3 (23-289)||(3140500-3140767)
chr3 (22-136)||(29523969-29524083)
chr3 (22-138)||(12342449-12342565)
chr3 (22-138)||(36801299-36801415)
chr3 (239-289)||(11310641-11310691)
chr3 (239-287)||(11203469-11203517)
chr3 (22-138)||(33496347-33496463)
chr3 (239-289)||(19890326-19890376)
chr3 (239-289)||(48570481-48570531)
chr3 (21-138)||(7031240-7031357)
chr3 (242-287)||(7031462-7031507)
chr3 (239-284)||(29524187-29524232)
chr3 (239-287)||(33496197-33496245)
chr3 (230-284)||(12342660-12342714)
chr3 (239-281)||(30695785-30695827)
chr3 (239-281)||(36801517-36801559)
chr3 (239-285)||(53184979-53185025)
chr3 (22-123)||(26771213-26771314)
[»] chr2 (20 HSPs)
chr2 (131-287)||(15391793-15391950)
chr2 (3-294)||(15917296-15917589)
chr2 (160-289)||(42563113-42563243)
chr2 (239-289)||(12645184-12645234)
chr2 (239-289)||(40176318-40176368)
chr2 (239-289)||(44473006-44473056)
chr2 (22-135)||(11000174-11000287)
chr2 (223-288)||(28252370-28252435)
chr2 (241-289)||(3400632-3400680)
chr2 (239-287)||(33516226-33516274)
chr2 (22-109)||(42563267-42563354)
chr2 (226-289)||(44023010-44023073)
chr2 (241-281)||(13059580-13059620)
chr2 (169-289)||(38604745-38604865)
chr2 (223-289)||(17765388-17765454)
chr2 (242-287)||(11000395-11000440)
chr2 (242-287)||(14439403-14439448)
chr2 (247-283)||(16241529-16241565)
chr2 (247-283)||(17569007-17569043)
chr2 (241-281)||(36930841-36930881)
[»] scaffold0161 (1 HSPs)
scaffold0161 (79-289)||(6290-6501)
[»] chr6 (22 HSPs)
chr6 (1-289)||(18682708-18682998)
chr6 (22-287)||(17330621-17330878)
chr6 (202-288)||(12429037-12429123)
chr6 (26-289)||(20883261-20883522)
chr6 (90-289)||(13937348-13937548)
chr6 (22-138)||(21630333-21630449)
chr6 (22-138)||(15959037-15959154)
chr6 (22-138)||(17606558-17606674)
chr6 (239-289)||(11462063-11462113)
chr6 (235-289)||(14373429-14373483)
chr6 (57-138)||(215203-215284)
chr6 (239-284)||(10929746-10929791)
chr6 (21-138)||(17579304-17579421)
chr6 (239-284)||(17606776-17606821)
chr6 (230-289)||(15959247-15959306)
chr6 (21-136)||(17573878-17573993)
chr6 (239-281)||(215059-215101)
chr6 (81-135)||(12427970-12428024)
chr6 (219-289)||(24767846-24767916)
chr6 (223-289)||(32536543-32536609)
chr6 (239-289)||(33185084-33185134)
chr6 (42-123)||(11462228-11462309)
[»] chr4 (18 HSPs)
chr4 (1-289)||(48242027-48242314)
chr4 (62-289)||(5790356-5790580)
chr4 (9-289)||(19740251-19740532)
chr4 (53-289)||(46145323-46145560)
chr4 (22-138)||(4548443-4548559)
chr4 (239-289)||(55726035-55726085)
chr4 (22-138)||(8360900-8361016)
chr4 (239-289)||(5148309-5148359)
chr4 (169-289)||(17402058-17402178)
chr4 (230-289)||(11587631-11587690)
chr4 (169-284)||(20002371-20002486)
chr4 (239-289)||(36223531-36223581)
chr4 (239-289)||(54483601-54483651)
chr4 (239-284)||(12697466-12697511)
chr4 (22-138)||(12697613-12697729)
chr4 (226-289)||(2822466-2822529)
chr4 (239-287)||(8360750-8360798)
chr4 (247-283)||(14137328-14137364)
[»] chr8 (21 HSPs)
chr8 (91-287)||(12257740-12257941)
chr8 (91-287)||(12265132-12265333)
chr8 (239-289)||(2529534-2529584)
chr8 (22-138)||(37433932-37434048)
chr8 (226-289)||(25090035-25090098)
chr8 (239-289)||(13199771-13199821)
chr8 (235-289)||(34137401-34137455)
chr8 (242-287)||(2169990-2170035)
chr8 (22-135)||(2170143-2170256)
chr8 (242-287)||(20823946-20823991)
chr8 (22-135)||(34137187-34137300)
chr8 (241-281)||(136574-136614)
chr8 (22-134)||(17699286-17699398)
chr8 (241-281)||(18309362-18309402)
chr8 (21-75)||(5181533-5181587)
chr8 (239-281)||(37433788-37433830)
chr8 (22-287)||(43270100-43270366)
chr8 (21-138)||(20824096-20824213)
chr8 (221-289)||(5181317-5181385)
chr8 (239-279)||(17699140-17699180)
chr8 (241-281)||(25890718-25890758)
[»] chr1 (14 HSPs)
chr1 (5-289)||(2490860-2491145)
chr1 (82-289)||(4646342-4646550)
chr1 (169-289)||(6478167-6478292)
chr1 (239-287)||(28351376-28351424)
chr1 (239-289)||(37192369-37192419)
chr1 (223-289)||(47623491-47623557)
chr1 (22-138)||(43388167-43388283)
chr1 (242-287)||(16918254-16918299)
chr1 (238-287)||(23635163-23635212)
chr1 (245-289)||(37297947-37297991)
chr1 (83-138)||(23635008-23635063)
chr1 (238-287)||(23713832-23713881)
chr1 (239-280)||(43388024-43388065)
chr1 (241-281)||(30713323-30713363)
[»] chr7 (5 HSPs)
chr7 (224-294)||(48394547-48394617)
chr7 (26-289)||(37254406-37254670)
chr7 (22-138)||(18530310-18530426)
chr7 (239-289)||(25619107-25619157)
chr7 (242-287)||(18530160-18530205)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 26072829 - 26072536
Alignment:
Q  1 tctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||     
T  26072829 tctgtttctgtcttgtccttcttttggtgcgttgtggccattggtgtggtcatggctcggtgttgaaggggtcgaatctcaggttatttcagaccatttc 26072730  T
Q  101 ttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacg 199  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26072729 ttgcaatttattcattatgcaggcggtttgaaatcgcggca-tcgttttttcaccttatatggctcctgtgtgtttggattttgtcgaatgatcggaacg 26072631  T
Q  200 acaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 294  Q
    ||| ||  |||||||||| |||||  || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26072630 acaagtcattcaggaacaaacaaaattccctaccgaaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgttgtc 26072536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 27166157 - 27166444
Alignment:
Q  3 tgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttttt 102  Q
    |||||||||||| |||  |||| || ||||||||||  ||| || || |||| |||||| |||||||||| || | ||||||||||||||| || || ||    
T  27166157 tgtttctgtcttgtccaactttcggcgcgttgtggcagttgatgcgggcatgacttggttttgaaggggtggactctcaggttatttcagatcacttctt 27166256  T
Q  103 gcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttggattttgtcgaatgatcggaacgac 201  Q
    |||||||  | |||||||||| ||| | |||||||| |  || ||||||||||| |||||||||||| |||||||| | |||| |||||| |  ||  ||    
T  27166257 gcaatttagtaattatgcaggtggtataaaatcgcgacgatcattttttcacctgatatggctcctttgtgtttgggtattgtggaatgaacaaaataac 27166356  T
Q  202 aggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27166357 aggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatg 27166444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 18089985 - 18090254
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    |||||| ||||||||||| |||||  ||   ||||| |||||||| ||||  ||   ||||||||||||| |||| || ||||||||| |||||||||||    
T  18089985 ttttggagcgttgtggcctttggttagggattggctcggtgttgagggggcggagagtcaggttatttcataccacttcttgcaatttattcattatgca 18090084  T
Q  122 ggcggtttgaaatcgcggcattcgtttttt-caccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacaca 219  Q
    || | | | |||||||||| |||||||||| || |  || |||||  | ||||||||| |||||| ||| |||| |||||||| ||| |||||||| ||     
T  18090085 ggtgatcttaaatcgcggcgttcgtttttttcatcagatttggcttttgtgtgtttgggttttgtggaaagatcagaacgacaagttattcaggaatact 18090184  T
Q  220 caaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    || |||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||||||    
T  18090185 catagctctttaccgcatatgttagataaagtaaaatcctattcattgtggtggttgaaggctggtaatg 18090254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 32228719 - 32228452
Alignment:
Q  23 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 122  Q
    ||||||||||||||||| |||||| |  | ||||| |||||||  ||| || |   |||| ||||  |||| ||||| ||||||||| || |||||||||    
T  32228719 tttggtgcgttgtggccgttggtgcgagcttggctaggtgttgttgggatcaagactcagtttataacagatcatttcttgcaatttattaattatgcag 32228620  T
Q  123 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 221  Q
    |  |||||| | |||| | ||| ||||| || || || |||||||| |||||||||||||||| || ||| ||||| || |   | ||||| || | |||    
T  32228619 gttgtttgagagcgcgacgttcctttttccatctaatttggctcctgtgtgtttggattttgtggactgagcggaatgataaagttttcagaaataaaca 32228520  T
Q  222 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  32228519 aagctctctaccgcatatgttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatg 32228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 289
Target Start/End: Original strand, 17106569 - 17106754
Alignment:
Q  104 caatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctccttgtgtttggattttgtcgaatgatcggaacgacag 203  Q
    |||||| |||||||||| || |||||| ||||||||   || |||||||||||||| | |||||||||||||||||| | | |||| |||| || |||||    
T  17106569 caatttattcattatgctggtggtttgcaatcgcggagatcattttttcaccttatttagctccttgtgtttggattatttggaataatcgcaatgacag 17106668  T
Q  204 gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||| || || || | |||||| |||||||| ||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  17106669 gttatttagaaataaacaaagttctctaccacaactgttagataaagttaaatcctatttgttgtggtggttgaaagatagtaatg 17106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 33169573 - 33169306
Alignment:
Q  23 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 122  Q
    |||| ||||||||||||  ||||| |  | |||||||||||||  || ||||||  |||| | ||  ||||||||||| |||||||| || |||||||||    
T  33169573 tttgatgcgttgtggccgatggtgcgagcttggcttggtgttgttggagtcgaaactcagttcataacagaccattttctgcaatttattaattatgcag 33169474  T
Q  123 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 221  Q
    | ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  33169473 gtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 33169374  T
Q  222 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
     |||||| |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  33169373 tagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 33169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 18148160 - 18148228
Alignment:
Q  219 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||| | || || |||||||||||||||||||| || || |||||||||||||||||||||||    
T  18148160 acaaagctctattccacatatgttagataaagtaaaatcatactctttgtggtggttgaaagctagtaa 18148228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 18359462 - 18359582
Alignment:
Q  169 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 268  Q
    ||||||||| |||| | |||||| ||||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || | ||||    
T  18359462 tgtgtttgggttttatggaatgaacggaatgacaggttatttcggaaccgtcaaagttctataccactattgttagataaagtaaaatcacatactttgt 18359561  T
Q  269 ggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||||    
T  18359562 ggtggttgaaagctagtaatg 18359582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 24407662 - 24407602
Alignment:
Q  228 tctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    |||||||||  |||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  24407662 tctaccgcatttgttagataaagtaaaatcttattccttgtagtggatgagagctagtaat 24407602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 33385598 - 33385714
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||| | || || | ||| | ||| ||||| |||||| |||||||| || |||||| |    
T  33385598 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaatgagtagattctcatgctatctcagatcattttgtgcaatttattgattatgta 33385697  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || || |||||||||||    
T  33385698 ggtggcttgaaatcgcg 33385714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 8300627 - 8300672
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  8300627 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 8300672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 25857647 - 25857764
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  25857647 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 25857746  T
Q  121 aggcggtttgaaatcgcg 138  Q
    ||| || |||||||||||    
T  25857747 aggtggcttgaaatcgcg 25857764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 27766741 - 27766696
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  27766741 tgttagataaagtaaaatcgaataccttgtggtggttgaaagctag 27766696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 10774149 - 10774101
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||  || ||||||||||||||||||| |||||    
T  10774149 tgttagataaagtaaaatcaaataccttgtggtggttgaaagccagtaa 10774101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 42927849 - 42927779
Alignment:
Q  219 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  42927849 acaaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgtaatg 42927779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 27766928 - 27766843
Alignment:
Q  53 tggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 138  Q
    ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | |||||||| | ||||||||||||    
T  27766928 tggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgcaggtgttttgaaatcgcg 27766843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 33385816 - 33385857
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaag 280  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  33385816 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 33385857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 8941832 - 8941900
Alignment:
Q  221 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||| |||||||  | ||| ||||| ||||||| | | ||||||||||| |||||||||||||||    
T  8941832 aaagctctttaccgcatttattacataaattaaaatcatgtaccttgtggtggctgaaagctagtaatg 8941900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 17098079 - 17098373
Alignment:
Q  1 tctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttt 100  Q
    ||||||||| |||| ||| |||||||||||||||||| | ||||||  |  |||||| ||||||||||||||||||| ||| |||||||||||||||||     
T  17098079 tctgtttctatcttgtccatcttttggtgcgttgtggtcgttggtgcagatatggctcggtgttgaaggggtcgaatctcaagttatttcagaccatttc 17098178  T
Q  101 ttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacg 199  Q
    ||||||||| ||||||| ||||| ||||||||||| | |   ||||||||| |||||||||||| ||| ||||||||| |||||| |||||||||||| |    
T  17098179 ttgcaatttattcattacgcaggtggtttgaaatcacagatatcgttttttgaccttatatggcccctatgtgtttgggttttgtggaatgatcggaatg 17098278  T
Q  200 acaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 294  Q
    ||||||| |||||||| | |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  17098279 acaggttattcaggaataaacaaagatctctaccgcatatgttagatgaagtaaaatcatattccttgtggtggttgaaatctagtaaagatgtc 17098373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 62 - 289
Target Start/End: Complemental strand, 15312459 - 15312230
Alignment:
Q  62 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcgg----cattcgttttttcacctt 157  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| | |||||||||||||||    ||||  ||||||||||||    
T  15312459 gttgaaggggtcgaatctcaggttatttcagaccatttctcgcaatttattcattatgcatgtggtttgaaatcgcggagatcatt--ttttttcacctt 15312362  T
Q  158 atatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaat 256  Q
    ||| ||||||| ||||||||| |||||| |||||||||||| | || ||| || ||||| |  |||||||| |||||  | |||||||||||| ||||||    
T  15312361 ataaggctcctatgtgtttgggttttgtggaatgatcggaatg-caagttatttaggaataagcaaagctcactaccatatatgttagataaactaaaat 15312263  T
Q  257 cttattccttgtggtggttgaaagctagtaatg 289  Q
    | |||||||||||||||||||||||||||||||    
T  15312262 catattccttgtggtggttgaaagctagtaatg 15312230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 62 - 289
Target Start/End: Complemental strand, 16178824 - 16178596
Alignment:
Q  62 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 161  Q
    ||||||||||| |||| ||| ||||| ||||||||||| | ||||||| | |||||| | || |||||||||||| ||   || ||||||||| |||| |    
T  16178824 gttgaaggggttgaatctcaagttatctcagaccatttctcgcaatttatccattatactggtggtttgaaatcgtggatatcattttttcactttattt 16178725  T
Q  162 ggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 260  Q
    ||||||| |||||||||||| | | |||||||||||| |||||||| || ||||||| ||||||||||| ||| | ||||||| ||||||| ||||  ||    
T  16178724 ggctcctatgtgtttggattatttggaatgatcggaatgacaggttatttaggaacaaacaaagctctcaaccactaatgttatataaagttaaattcta 16178625  T
Q  261 ttccttgtggtggttgaaagctagtaatg 289  Q
    ||| |||||||||||||||||||||||||    
T  16178624 ttcattgtggtggttgaaagctagtaatg 16178596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 50651640 - 50651840
Alignment:
Q  90 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 188  Q
    ||||||||| |||||| ||| || |||||||||| ||||||| | | || |  || |||||||| || || ||||| || ||||||||||| |||| |||    
T  50651640 cagaccattgtttgcagtttattaattatgcaggtggtttgagagcacgacggtctttttttcatctaatttggctgctgtgtgtttggatattgtggaa 50651739  T
Q  189 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    ||| ||||| || ||  | ||||| || |  || || ||| |||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50651740 tgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttgttaggtaaagtaaaatcttattccttgtggtggttgaaagctagtaat 50651839  T
Q  289 g 289  Q
    |    
T  50651840 g 50651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 963455 - 963655
Alignment:
Q  90 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 188  Q
    |||||||||||||||||||| || |||||| ||| ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||    
T  963455 cagaccattttttgcaatttattaattatgtaggtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaa 963554  T
Q  189 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    ||| ||||| || ||  | |||   || | | | |||||| |||||||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  963555 tgagcggaatgatagagttttccaaaataaatatagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaat 963654  T
Q  289 g 289  Q
    |    
T  963655 g 963655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 289
Target Start/End: Complemental strand, 3140767 - 3140500
Alignment:
Q  23 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 122  Q
    |||||||||||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||   ||||||||||||||||||| || |||||||||    
T  3140767 tttggtgcgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataaaagaccattttttgcaatttattaattatgcag 3140668  T
Q  123 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 221  Q
    | | ||||| | | |  | ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  3140667 gtgatttgagagcacaacgttcttttttccaactaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 3140568  T
Q  222 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||| |||||||  ||||||||||||||||||| | || ||||| |||  |||||||||||||||    
T  3140567 aagctctttaccgcatttgttagataaagtaaaatcatgtttcttgtcgtgactgaaagctagtaatg 3140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 29523969 - 29524083
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  29523969 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctcataatatctcagatcattttgtgcaatttattgaatatgca 29524068  T
Q  122 ggcggtttgaaatcg 136  Q
    || ||||||||||||    
T  29524069 ggtggtttgaaatcg 29524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 12342449 - 12342565
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||| |||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  12342449 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaagaggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 12342548  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  12342549 ggtggtttgaaatcgcg 12342565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 36801299 - 36801415
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  36801299 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 36801398  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || || |||||||||||    
T  36801399 ggtggcttgaaatcgcg 36801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 11310641 - 11310691
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  11310641 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagcaatg 11310691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 11203517 - 11203469
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||    
T  11203517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 11203469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 33496463 - 33496347
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||  |||||| |||||||| || | ||||||    
T  33496463 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagctcattttgtgcaatttattgaatatgca 33496364  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || | ||||||||||||    
T  33496363 ggtgatttgaaatcgcg 33496347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 19890376 - 19890326
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  |  |||||||||||||||||||||||||||    
T  19890376 tgttagataaagtaaaatcacacaccttgtggtggttgaaagctagtaatg 19890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 48570481 - 48570531
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  48570481 tgttagataaagtaaaatcaaattccctgtggtggttgaaagctaataatg 48570531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 7031240 - 7031357
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  7031240 cttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatcactttgtgcaatttattgaatatgc 7031339  T
Q  121 aggcggtttgaaatcgcg 138  Q
    ||| || |||||||||||    
T  7031340 aggtggcttgaaatcgcg 7031357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 7031462 - 7031507
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  7031462 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 7031507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 29524187 - 29524232
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  29524187 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 29524232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 33496245 - 33496197
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||||    
T  33496245 tgttagataaagtaaaatcaaataccttgtggtggttgaaagttagtaa 33496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 12342660 - 12342714
Alignment:
Q  230 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||| | |||||||||||||||||||  || |||||| |||||||||||||||    
T  12342660 taccgctattgttagataaagtaaaatcaaataccttgtagtggttgaaagctag 12342714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 30695785 - 30695827
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  30695785 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 30695827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 36801517 - 36801559
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  36801517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 36801559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 53184979 - 53185025
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 285  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||    
T  53184979 tgttagataaagtaaaatcacataccttgtggtggttgaaagttagt 53185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 26771213 - 26771314
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    |||| |||| || |||||||||||| || | ||| |||| ||||||||||| ||   ||||  |||||| ||| |||||||||||||| ||||||| |||    
T  26771213 ttttagtgccttatggccattggtgagggcttggtttggggttgaaggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgca 26771312  T
Q  122 gg 123  Q
    ||    
T  26771313 gg 26771314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 15391950 - 15391793
Alignment:
Q  131 aaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctc 229  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  15391950 aaatcggggcgttcgttttttcaccttatatggctcctgtgtgtttgggttttgtggaatgatcggaacgacaggttgtttaggaacaaacaaagctctc 15391851  T
Q  230 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15391850 taccgcaattgttagataaagttaaatcttattccttgtggtggttgaaagctagtaa 15391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 15917589 - 15917296
Alignment:
Q  3 tgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttttt 102  Q
    ||||| |||||| |||  ||||||| ||||||||||||||||||  | |||||||  |||||| ||||||||  | ||||| ||||||||||||||||||    
T  15917589 tgtttttgtcttgtccaacttttggcgcgttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctcaggctatttcagaccatttttt 15917490  T
Q  103 gcaatttgttcattatgcaggcggtttgaaa-tcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacga 200  Q
    ||||||| ||||||||||||| || | |||| ||||| |  || ||||| ||| |  | || || |  ||||||||| |||||| |||||| ||||| ||    
T  15917489 gcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggttttgtggaatgaacggaatga 15917390  T
Q  201 caggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 294  Q
    |||  | || ||||| | |||||||||| |||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  15917389 cagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatgttgtc 15917296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 42563243 - 42563113
Alignment:
Q  160 atggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatct 258  Q
    ||||||||| ||| ||||| |||||| ||||||  |||| || ||  | |||||||| | ||||| |||||| | ||| |||||| |||||||||||||     
T  42563243 atggctcctctgtatttgggttttgtggaatgagaggaatgatagagttttcaggaataaacaaaactctcttctgcatatgttaaataaagtaaaatca 42563144  T
Q  259 tattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||||||||||||||    
T  42563143 tattccttgtggtggttgaaagctagtaatg 42563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 12645234 - 12645184
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  12645234 tgttagataaagtaaaatctcataccttgtggtggttaaaagctagtaatg 12645184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 40176368 - 40176318
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  40176368 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaatg 40176318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 44473056 - 44473006
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  44473056 tgttagataaagtaaaatcatattctttgtggtggttgaaagctaataatg 44473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 11000174 - 11000287
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  11000174 ttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 11000273  T
Q  122 ggcggtttgaaatc 135  Q
    || || ||||||||    
T  11000274 ggtggcttgaaatc 11000287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 28252435 - 28252370
Alignment:
Q  223 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||    
T  28252435 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaat 28252370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 3400680 - 3400632
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  3400680 ttagataaagtaaaatcatataccttgtggtggttgaaagctattaatg 3400632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 33516226 - 33516274
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  33516226 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaa 33516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 42563354 - 42563267
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaattt 109  Q
    |||||||||||||||| | |||||  || | ||||| ||||| | | ||||||| | ||||||||||||||||||||| |||||||||    
T  42563354 ttttggtgcgttgtggtcgttggtccgggcttggctcggtgtagtatgggtcgattctcaggttatttcagaccatttcttgcaattt 42563267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 44023073 - 44023010
Alignment:
Q  226 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||| ||  |||||||||||||||||||  || || ||||||||||||||||||||||||    
T  44023073 tctctaccacagttgttagataaagtaaaatcaaataccctgtggtggttgaaagctagtaatg 44023010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 13059620 - 13059580
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  13059620 ttagataaagtaaagttttattccttgtggtggttgaaagc 13059580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 38604745 - 38604865
Alignment:
Q  169 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 268  Q
    ||||| ||| |||||| |||||| ||||| |||| | | ||||||||   |||||||||| |||| ||  |||| || ||||||||||| |  |  ||||    
T  38604745 tgtgtgtgggttttgtggaatgaacggaatgacacgctattcaggaatcaacaaagctctataccacagttgttggaaaaagtaaaatcatgctttttgt 38604844  T
Q  269 ggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||||    
T  38604845 ggtggttgaaagctagtaatg 38604865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 17765388 - 17765454
Alignment:
Q  223 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||| |||| ||| ||||||| ||||||||||| | ||| |||||| |||| |||||||||||||    
T  17765388 agctctttaccacaattgttagacaaagtaaaatcatcttctttgtgggggttaaaagctagtaatg 17765454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 11000395 - 11000440
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||| |||||| | || |||||||||||||||||||||||||    
T  11000395 tagataaattaaaatttcataccttgtggtggttgaaagctagtaa 11000440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 14439448 - 14439403
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||    
T  14439448 tagataaagtaaaatcacaaaccttgtggtggttgaaagctagtaa 14439403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 16241565 - 16241529
Alignment:
Q  247 aaagtaaaatcttattccttgtggtggttgaaagcta 283  Q
    |||||||| |||||||||||||||||| |||||||||    
T  16241565 aaagtaaagtcttattccttgtggtggctgaaagcta 16241529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 17569007 - 17569043
Alignment:
Q  247 aaagtaaaatcttattccttgtggtggttgaaagcta 283  Q
    |||||||||| |||||| |||||||||||||||||||    
T  17569007 aaagtaaaatattattctttgtggtggttgaaagcta 17569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 36930881 - 36930841
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  36930881 ttagataaagtaaaatactattcattgtggtggttgaaagc 36930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 289
Target Start/End: Original strand, 6290 - 6501
Alignment:
Q  79 tcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttgg 177  Q
    |||| |||||||| |||| || ||||||||| ||||||||||||| | | |||||||||||| |||||| |||||| | || ||| ||||| ||||||||    
T  6290 tcagattatttcaaaccacttcttgcaatttattcattatgcaggtgatctgaaatcgcggcgttcgttctttcacttgatttgggtcctttgtgtttgg 6389  T
Q  178 attttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttga 277  Q
     |||||| |||  |||||||||||||||| |||||||| |  || |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  6390 gttttgtggaaatatcggaacgacaggttattcaggaataaccatagctctttaccgcatatgttagataaagtaaaatcttattcattgtggtggttga 6489  T
Q  278 aagctagtaatg 289  Q
    ||||||||||||    
T  6490 aagctagtaatg 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 18682708 - 18682998
Alignment:
Q  1 tctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttt 100  Q
    ||||||| |||||| ||| | |||||||||| ||||||| |||||   ||| ||||||||  | |  |||||||||| |||||||||||||||||||||     
T  18682708 tctgtttttgtcttgtccgtattttggtgcgctgtggccgttggttcagtcttggcttggcatagttggggtcgaatctcaggttatttcagaccatttc 18682807  T
Q  101 ttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacg 199  Q
    ||||||||  || |||||||||| ||||||| ||||||    |||||||||||||||||||||||| | ||| ||| | | |||| |||||| || ||      
T  18682808 ttgcaattcattaattatgcaggtggtttgagatcgcgatgctcgttttttcaccttatatggctcttatgtatttaggtgttgtggaatgagcgaaatc 18682907  T
Q  200 acag-gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    | || | | |||||||||| ||||||||| |||||||| |||||||||||||||||||| | ||||||||| ||| ||||||| |||||||    
T  18682908 atagagcttttcaggaacaaacaaagctcgctaccgcatatgttagataaagtaaaatcattttccttgtgctggctgaaagcgagtaatg 18682998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 17330878 - 17330621
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    |||||||||| ||||||| ||| || || ||||||| ||||||| ||    |||   ||||||||||||||||||||||||||||||| ||||||||| |    
T  17330878 ttttggtgcgctgtggcctttgatgcgggcatggctcggtgttgcagacaccgagagtcaggttatttcagaccattttttgcaatttattcattatgta 17330779  T
Q  122 ggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacac 220  Q
    || | | |||  || |||| |||||||||||| ||||| | |||||| ||||||||| |||||| ||| |||||||| ||         |||||| | ||    
T  17330778 ggtgttctgacctctcggcgttcgttttttcatcttatttagctcctgtgtgtttgggttttgtggaaggatcggaatga---------caggaataaac 17330688  T
Q  221 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    | ||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  17330687 atagctctctatcgcatatgttagataaagtaaaatcatattctttgtggtggttgaaagttagtaa 17330621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 12429037 - 12429123
Alignment:
Q  202 aggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    ||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  12429037 aggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtagttgaaagctagtaat 12429123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 20883261 - 20883522
Alignment:
Q  26 ggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcg 125  Q
    ||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| |||||||||||| |||||||| || | |||||||| |    
T  20883261 ggtgcattgtggcctatggtgcggacatggcttggtgtcgaaggggtagattctcatgctatctcagaccattttgtgcaatttattgaatatgcaggtg 20883360  T
Q  126 gtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaag 224  Q
    | |||||||| || |  || || |||||  | || ||||| |  ||||| ||| |||| | |||  || |||| |||||||| ||  |||||   |||||    
T  20883361 gcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggttttatggaa--at-ggaatgacaggttatttcggaaccgtcaaag 20883457  T
Q  225 ctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
     ||| |||| | | |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  20883458 ttctataccactattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 20883522  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 289
Target Start/End: Complemental strand, 13937548 - 13937348
Alignment:
Q  90 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 188  Q
    |||||||||||||||||||| || |||||||||| ||| ||| | | || | ||| ||||| || || || |||||  | ||||||||||| |||| |||    
T  13937548 cagaccattttttgcaatttattaattatgcaggtggtatgagagcacgacgttcttttttccatctaatttggcttttgtgtgtttggatattgtggaa 13937449  T
Q  189 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 288  Q
    ||| ||||| || ||  | |||   || | | | |||||| ||| |||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  13937448 tgagcggaatgatagagttttccaaaataaatatagctctttactgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaat 13937349  T
Q  289 g 289  Q
    |    
T  13937348 g 13937348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 21630333 - 21630449
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | ||||||    
T  21630333 ttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgca 21630432  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || | ||||||||||||    
T  21630433 ggtgttttgaaatcgcg 21630449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 15959037 - 15959154
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtg-gtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    ||||||||| || |||||||||||| | | | |||||||| |||||||||||  |   ||||  ||||||||||||||||| ||||||||||||||| ||    
T  15959037 ttttggtgccttatggccattggtgagaggcttggcttggggttgaaggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgc 15959136  T
Q  121 aggcggtttgaaatcgcg 138  Q
    |||  | |||||||||||    
T  15959137 aggttgcttgaaatcgcg 15959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 17606558 - 17606674
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||| | |||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | ||||||    
T  17606558 ttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgca 17606657  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  17606658 ggtggtttgaaatcgcg 17606674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 11462113 - 11462063
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||| ||||||||||||||  || |||||||||||||||||||||||||||    
T  11462113 tgttggataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 11462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 14373429 - 14373483
Alignment:
Q  235 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  14373429 caaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 14373483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 215284 - 215203
Alignment:
Q  57 ttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 138  Q
    |||||||||||||||| || | ||| | ||| ||||| |||||| |||||||| || | |||||||| ||||||||||||||    
T  215284 ttggtgttgaaggggtagattttcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggtttgaaatcgcg 215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 10929746 - 10929791
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  10929746 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 10929791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 17579304 - 17579421
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  17579304 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 17579403  T
Q  121 aggcggtttgaaatcgcg 138  Q
    ||| || |||||||||||    
T  17579404 aggtggcttgaaatcgcg 17579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 17606776 - 17606821
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  17606776 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 17606821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 15959247 - 15959306
Alignment:
Q  230 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||| ||||||||    
T  15959247 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagttagtaatg 15959306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 17573878 - 17573993
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  17573878 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 17573977  T
Q  121 aggcggtttgaaatcg 136  Q
    ||| || |||||||||    
T  17573978 aggtggcttgaaatcg 17573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 215101 - 215059
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  215101 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 215059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 12427970 - 12428024
Alignment:
Q  81 aggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatc 135  Q
    ||||||||||||| || || ||||||||| || |||||||||| |||||||||||    
T  12427970 aggttatttcagatcacttcttgcaatttattaattatgcaggtggtttgaaatc 12428024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 24767846 - 24767916
Alignment:
Q  219 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  24767846 acaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaagcttgtaatg 24767916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 32536609 - 32536543
Alignment:
Q  223 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| || |||||||| ||||||| |||||    
T  32536609 agctctttaccacaaatgttagacaaagtaaaatcatcttctttttggtggttaaaagctattaatg 32536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 33185134 - 33185084
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||||| || || ||| | |||||||||||||||||||||||||    
T  33185134 tgttagataaagtgaattcatatgctttgtggtggttgaaagctagtaatg 33185084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 11462309 - 11462228
Alignment:
Q  42 tggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcagg 123  Q
    ||||| || ||||||||||||| |||||||| || | ||| ||||| ||||| |||||| |||||||| || | ||||||||    
T  11462309 tggtgcgggcatggcttggtgtcgaaggggtagattctcatgttatctcagatcattttgtgcaatttattgaatatgcagg 11462228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 48242314 - 48242027
Alignment:
Q  1 tctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccatttt 100  Q
    |||||||||| ||| ||| |||| ||||||| | ||| | || ||| || | |||||  | ||||||||||| |||| |||||||||||||||| ||||     
T  48242314 tctgtttctgacttgtccatcttatggtgcgctttggtcgttagtgcgggcgtggctcagagttgaaggggttgaatctcaggttatttcagacaatttc 48242215  T
Q  101 ttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacg 199  Q
    | ||||||| | |||||||| || ||||| ||| |||     || ||||| ||||||||||||||||| |||||||||||| | | |||||||||||| |    
T  48242214 tcgcaatttatccattatgctggtggtttaaaaccgcatatatcattttt-caccttatatggctcctatgtgtttggattatatggaatgatcggaatg 48242116  T
Q  200 acaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||| ||| || | ||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  48242115 acatgttatttaagaacaaacaaagctctc-accacatatgttagataaagtaaaatcatattccttgtgttggttgaaagttagtaatg 48242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 5790356 - 5790580
Alignment:
Q  62 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 161  Q
    ||||||||||  |||| ||||||||| ||||||||||| | ||||||| | |||||||| || |||||| ||||||||   || |||||||||||||| |    
T  5790356 gttgaaggggctgaatctcaggttatctcagaccatttctcgcaatttatccattatgctggtggtttgcaatcgcggagatcattttttcaccttattt 5790455  T
Q  162 ggctcctt-gtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 260  Q
    | |||||| |||||| |||| | | |||||||||||| |||| |||    ||||||| |||||| |||||||| ||| |||||||| |||| ||||| ||    
T  5790456 gactcctttgtgttttgattatttggaatgatcggaatgacatgtt----aggaacaaacaaagttctctaccacaactgttagatcaagttaaatccta 5790551  T
Q  261 ttccttgtggtggttgaaagctagtaatg 289  Q
    ||| |||||||||||||||||||||||||    
T  5790552 ttcgttgtggtggttgaaagctagtaatg 5790580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 19740251 - 19740532
Alignment:
Q  9 tgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatt 108  Q
    |||||| |||||  ||||||||||||||| |  ||||| |  | ||||||||||| |  |||||||||  |||| ||||  |||||||||| || |||||    
T  19740251 tgtcttgtccttactttggtgcgttgtggtcgatggtgcgagcttggcttggtgtggttggggtcgaaactcagtttatagcagaccatttcttacaatt 19740350  T
Q  109 tgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttg 207  Q
    | || |||||| ||| ||||||| | |||  ||||| |||||  | || || |||||| | |||||||||||||||| |||||| ||||| || ||  |     
T  19740351 tattaattatgtaggtggtttgagagcgcatcattcctttttctatctaatttggctcttgtgtgtttggattttgtggaatgagcggaatgatagagtt 19740450  T
Q  208 ttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||| || | ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  19740451 ttcagaaataaacaaagctctctatcgcatatgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 19740532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 289
Target Start/End: Complemental strand, 46145560 - 46145323
Alignment:
Q  53 tggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttc 152  Q
    |||||||||||||  |||||||||  |||| | ||  |||||||||||||||||||| || |||||||||| ||| ||| | | |||| ||| ||||| |    
T  46145560 tggcttggtgttgttggggtcgaaactcagttcataacagaccattttttgcaatttattaattatgcaggtggtatgagagcacggcgttcttttttcc 46145461  T
Q  153 accttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagt 251  Q
    | || || |||||  | ||||||||||| |||| |||||| ||||| || ||  | ||| | || | ||| |||||| |||||||  |||||||||||||    
T  46145460 atctaatttggcttatgtgtgtttggatattgtggaatgagcggaatgatagagttttctgaaataaacacagctctttaccgcatttgttagataaagt 46145361  T
Q  252 aaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||| | |||||| || ||| |||||| ||||||||    
T  46145360 aaaatcatgttccttatgatggatgaaagttagtaatg 46145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 4548443 - 4548559
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||||||  |||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  4548443 ttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 4548542  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  4548543 ggtggtttgaaatcgcg 4548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 55726035 - 55726085
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  55726035 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 55726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 8361016 - 8360900
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| | |||||| || | ||||||    
T  8361016 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgttcaatttattgaatatgca 8360917  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  8360916 ggtggtttgaaatcgcg 8360900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 5148359 - 5148309
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  5148359 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 5148309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 17402058 - 17402178
Alignment:
Q  169 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 268  Q
    ||||||||  |||||| |||||| ||||| || ||| | || || |||| | |||||||| |||| || |||||||||||||||||||| | ||| ||||    
T  17402058 tgtgtttgagttttgtggaatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagataaagtaaaatcatcttctttgt 17402157  T
Q  269 ggtggttgaaagctagtaatg 289  Q
    ||| ||| || ||||||||||    
T  17402158 ggtagttaaaggctagtaatg 17402178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 11587631 - 11587690
Alignment:
Q  230 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  11587631 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 11587690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 20002486 - 20002371
Alignment:
Q  169 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 268  Q
    ||||||||| |||| | ||| || ||||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || ||||||    
T  20002486 tgtgtttgggttttattgaaggaacggaatgacaggttatttcggaactgtcaaagttctataccactattgttagataaagtaaaatcacataccttgt 20002387  T
Q  269 ggtggttgaaagctag 284  Q
    ||||||||||||||||    
T  20002386 ggtggttgaaagctag 20002371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 36223531 - 36223581
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||||||||||| ||||||||||| | | |||||||||||||||    
T  36223531 tgttagataaagtaaaatcatattccttgtgatagctgaaagctagtaatg 36223581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 54483601 - 54483651
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  || ||||||||||| |||||||||||||||    
T  54483601 tgttagataaagtaaaatcaaataccttgtggtggctgaaagctagtaatg 54483651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 12697511 - 12697466
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 284  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  12697511 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 12697466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 12697729 - 12697613
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| || ||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| || || || ||| |||||||| || | ||||||    
T  12697729 ttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctccgatcactttgtgcaatttattgaatatgca 12697630  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  12697629 ggtggtttgaaatcgcg 12697613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 2822466 - 2822529
Alignment:
Q  226 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||| ||  ||||||||||||| |||||  ||||  ||||||||||||||||||||||||    
T  2822466 tctctaccacagttgttagataaagtgaaatcaaattctctgtggtggttgaaagctagtaatg 2822529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 8360798 - 8360750
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||  || |||| |||||||||||||| |||||    
T  8360798 tgttagataaagtaaaatcaaataccttatggtggttgaaagccagtaa 8360750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 14137364 - 14137328
Alignment:
Q  247 aaagtaaaatcttattccttgtggtggttgaaagcta 283  Q
    |||||||||| |||||| |||||||||||||||||||    
T  14137364 aaagtaaaatattattctttgtggtggttgaaagcta 14137328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 287
Target Start/End: Original strand, 12257740 - 12257941
Alignment:
Q  91 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 189  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12257740 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12257839  T
Q  190 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 285  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12257840 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12257939  T
Q  286 aa 287  Q
    ||    
T  12257940 aa 12257941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 287
Target Start/End: Original strand, 12265132 - 12265333
Alignment:
Q  91 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 189  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12265132 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12265231  T
Q  190 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 285  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12265232 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12265331  T
Q  286 aa 287  Q
    ||    
T  12265332 aa 12265333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 2529584 - 2529534
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  2529584 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 2529534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 37434048 - 37433932
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | |||||| |||| ||||||||||| | ||| | ||| ||||| |||||| |||||||| || | |||||     
T  37434048 ttttggtgcattgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctcatgctatctcagatcattttgtgcaatttattgaatatgcg 37433949  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  37433948 ggtggtttgaaatcgcg 37433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 25090098 - 25090035
Alignment:
Q  226 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||| ||  |||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  25090098 tctctaccacagttgttagataaagtaaaatcaaattccttgtggtggctgaaagctagtaatg 25090035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 13199821 - 13199771
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||    
T  13199821 tgttagataaagtaaaatctcataccttgtggtggtcgaaagctagtaatg 13199771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 34137401 - 34137455
Alignment:
Q  235 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  34137401 caaatgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagtaatg 34137455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 2170035 - 2169990
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  2170035 tagataaagtaaaatcacataccttgtggtggttgaaagctagtaa 2169990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 2170256 - 2170143
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  2170256 ttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 2170157  T
Q  122 ggcggtttgaaatc 135  Q
    || || ||||||||    
T  2170156 ggtggcttgaaatc 2170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 20823991 - 20823946
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  20823991 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 20823946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 34137187 - 34137300
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||||||||||||| ||   ||||| || |||||||  || ||   ||||  |||||  |||||||||||||||||| |||||||||||    
T  34137187 ttttggtgccttgtggccattggtgagggagtggctaggggttgaagctgttgaccctcagcatattttggaccattttttgcaatttattcattatgca 34137286  T
Q  122 ggcggtttgaaatc 135  Q
    ||  ||||||||||    
T  34137287 ggttgtttgaaatc 34137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 136614 - 136574
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  136614 ttagataaagtaaagttttattccttgtggtggttgaaagc 136574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 17699398 - 17699286
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||| || |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  17699398 ttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 17699299  T
Q  122 ggcggtttgaaat 134  Q
    || || |||||||    
T  17699298 ggtggcttgaaat 17699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 18309362 - 18309402
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  18309362 ttagataaagtaaagttttattccttgtggtggttgaaagc 18309402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 5181587 - 5181533
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcga 75  Q
    |||||||||| |||||||||||||||| | ||||||| ||||| | |||||||||    
T  5181587 cttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggtcga 5181533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 37433830 - 37433788
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  37433830 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 37433788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 287
Target Start/End: Complemental strand, 43270366 - 43270100
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||| |  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  43270366 ttttggtgcattgtggtctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 43270267  T
Q  122 ggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacac 220  Q
    || || |||||||| || | ||| || |||||  | || ||||| |  ||||||| | | || | |||||| ||||| |||| ||| ||   ||||   |    
T  43270266 ggtggcttgaaatctcgtcgttccttatttcatttaatttggcttcagtgtgtttcggtgttatggaatgaacggaatgacatgttatttcagaaccgtc 43270167  T
Q  221 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||| ||| |||| | | || ||||||||||||||||  || |||||||||| ||||||||||||||    
T  43270166 aaagttctataccactattgctagataaagtaaaatcacataccttgtggtgtttgaaagctagtaa 43270100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 20824213 - 20824096
Alignment:
Q  21 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 120  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| ||| |||| || | |||||    
T  20824213 cttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcgatttattgaatatgc 20824114  T
Q  121 aggcggtttgaaatcgcg 138  Q
    ||| || |||||||||||    
T  20824113 aggtggcttgaaatcgcg 20824096  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 5181385 - 5181317
Alignment:
Q  221 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||| ||| |||| || |||||||||||||||||||| | ||  ||||||||||| |||| ||||||||    
T  5181385 aaagttctttaccacatatgttagataaagtaaaatcatcttatttgtggtggttaaaagttagtaatg 5181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 17699180 - 17699140
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaa 279  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  17699180 tgttagataaagtaaaatcaaataccttgtggtggttgaaa 17699140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 25890758 - 25890718
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  25890758 ttagataaagtaaagttttattctttgtggtggttgaaagc 25890718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 2491145 - 2490860
Alignment:
Q  5 tttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgc 104  Q
    |||||||||| ||| |  |||||||||||||||||  |||||||  | |||||||||||||| |||||||||  |||| | ||  ||||||||| |||||    
T  2491145 tttctgtcttgtccgtactttggtgcgttgtggccgatggtgtgagcttggcttggtgttgatggggtcgaaactcagttcataacagaccattgtttgc 2491046  T
Q  105 aatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacag 203  Q
    | ||| || |||||||||| |||| || | | || |  || ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||    
T  2491045 agtttattaattatgcaggtggttcgagagcacgacgatcttttttccatctaatttggctgctgtgtgtttggatattgtggaatgagcggaatgatag 2490946  T
Q  204 gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
      | ||||| || |  || || ||| |||| ||  |||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  2490945 cgttttcagtaataatcatagttctttaccacatttgttagataaagtaaaatcttattccctgtggtggctgaaagttagtaatg 2490860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 289
Target Start/End: Original strand, 4646342 - 4646550
Alignment:
Q  82 ggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggatt 180  Q
    ||||||||| || || || ||||||||| || |||||| ||| ||| ||||||||||||  ||  ||||||| || ||||| ||| | ||||||||| |     
T  4646342 ggttatttcggatcacttcttgcaatttattaattatgtaggtggtctgaaatcgcggcgatccctttttcatctgatatgactcttgtgtgtttgggta 4646441  T
Q  181 ttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaag 280  Q
    |||| ||| || || ||  | ||||| || |||||   |||||||||| |||  ||  ||||||||||||||||||| ||||| ||||||||||||||||    
T  4646442 ttgtggaacgaacgaaataagaggttatttaggaatcaacaaagctctatactacatctgttagataaagtaaaatcatattctttgtggtggttgaaag 4646541  T
Q  281 ctagtaatg 289  Q
    |||||||||    
T  4646542 ctagtaatg 4646550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 6478292 - 6478167
Alignment:
Q  169 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaa-----atgttagataaagtaaaatcttattc 263  Q
    |||||||||||||||| || ||| ||||| || ||  | ||||| || | ||||||||||||||||||      |||||||||||||||||||| |||||    
T  6478292 tgtgtttggattttgtggactgagcggaatgatagagttttcagaaatagacaaagctctctaccgcatcgcatatgttagataaagtaaaatcatattc 6478193  T
Q  264 cttgtggtggttgaaagctagtaatg 289  Q
    |||||||||| | ||||||| |||||    
T  6478192 cttgtggtggctaaaagctaataatg 6478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 28351424 - 28351376
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  28351424 tgttagataaagtaaaatcatattcattgtggtggttgaaagctagtaa 28351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 37192369 - 37192419
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37192369 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 47623491 - 47623557
Alignment:
Q  223 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  47623491 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 47623557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 43388283 - 43388167
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| ||| | || ||| |||||||| || | ||||||    
T  43388283 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcatatcactttgtgcaatttattgaatatgca 43388184  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || ||||||||||||||    
T  43388183 ggtggtttgaaatcgcg 43388167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 16918254 - 16918299
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  16918254 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 16918299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 23635163 - 23635212
Alignment:
Q  238 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||| |||||  |||||||||||||||| |||||    
T  23635163 atgttagataaagtaaaatcatattctctgtggtggttgaaagcgagtaa 23635212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 37297947 - 37297991
Alignment:
Q  245 ataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||  || |||||||||||||||||||||||||||    
T  37297947 ataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37297991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 23635008 - 23635063
Alignment:
Q  83 gttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 138  Q
    ||||||||||| ||||| ||||||||| || ||||||||||  |||||||||||||    
T  23635008 gttatttcagatcatttcttgcaatttattaattatgcaggtagtttgaaatcgcg 23635063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 23713832 - 23713881
Alignment:
Q  238 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    |||||||||||||||||||| |||||  | |||||||||||||| |||||    
T  23713832 atgttagataaagtaaaatcatattctctatggtggttgaaagcgagtaa 23713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 43388065 - 43388024
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaag 280  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43388065 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 43388024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 30713323 - 30713363
Alignment:
Q  241 ttagataaagtaaaatcttattccttgtggtggttgaaagc 281  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  30713323 ttagataaagtaaaatattattcattatggtggttgaaagc 30713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 48394617 - 48394547
Alignment:
Q  224 gctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 294  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  48394617 gctctctaccgcatatgttagataaaataaaatcatattccttgtggtggttgaaagctagtaatgttgtc 48394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 37254670 - 37254406
Alignment:
Q  26 ggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcg 125  Q
    ||||| ||||||||  ||||| || ||||||||||||| ||||||||  | | ||| | ||| ||||| |||||| |||||||| || | |||||||| |    
T  37254670 ggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtaaattctcatgctatctcagatcattttgtgcaatttattgaatatgcaggtg 37254571  T
Q  126 gtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaag 224  Q
    | ||| |||| || |  || || |||||  |||| ||||| |  ||||||||| |||| | ||||||  |||| | |||||| ||  |||||   |||||    
T  37254570 gcttggaatcccgtcgatctttatttcattttatttggcttcagtgtgtttgggttttatggaatgaatggaatggcaggttatttcggaactgtcaaag 37254471  T
Q  225 ctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
     ||| |||| ||| |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37254470 ttctataccacaattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37254406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 18530426 - 18530310
Alignment:
Q  22 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 121  Q
    ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  18530426 ttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatcagatcattttgtgcaatttattgaatatgca 18530327  T
Q  122 ggcggtttgaaatcgcg 138  Q
    || || |||||||||||    
T  18530326 ggtggcttgaaatcgcg 18530310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 25619157 - 25619107
Alignment:
Q  239 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 289  Q
    |||||||||||||||||||  || |||| ||||||||||||||||||||||    
T  25619157 tgttagataaagtaaaatcacataccttatggtggttgaaagctagtaatg 25619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 18530205 - 18530160
Alignment:
Q  242 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 287  Q
    ||||||||||||||||  || ||||||||||||||||| |||||||    
T  18530205 tagataaagtaaaatcacataccttgtggtggttgaaaactagtaa 18530160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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