View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_1 (Length: 735)
Name: NF8026_low_1
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_1 |
 | |
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| [»] scaffold0060 (3 HSPs) |
| | |
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| [»] scaffold1769 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 191 - 714
Target Start/End: Original strand, 8436464 - 8436987
Alignment:
| Q |
191 |
acgagtaaacttacctttaaattcctgtgatttccattatttttggtatattagatttgattcttagacaacaaaggcagtggaaacatttttggcctgt |
290 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436464 |
acgagtaaacttacctttaaattcctgtgatttccattatttttggtatattagatttgattcttagacaacaaaggcagtggaaacatttttggcctgt |
8436563 |
T |
|
| Q |
291 |
ggtttgtgacataatagtcatgatcattctcttcgtatgtgtcggtatggtcagacatagttcaactttttctaaccaaggaggtccttttgttggtaac |
390 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436564 |
ggtatgtgacataatagtcatgatcattctcttcggatgtgtcggtatggtcagacatagttcaactttttctaaccaaggaggtccttttgttggtaac |
8436663 |
T |
|
| Q |
391 |
aatagcttaatcatcaaccaggaacttggattaaaatttaataatctctactctgatgaagaaacaagaaacaaaagaaaaccaaaaataatattttaaa |
490 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436664 |
aatagcttaatcatcaaccagaaacttggattaaaatttaataatctctactctgatgaagaaacaagaaacaaaagaaaaccaaaaataatattttaaa |
8436763 |
T |
|
| Q |
491 |
gaaccaaccatcaacgatactacagtactaaagctgataaatttattttgttttaacacaatgaactgagaaccatactataagtgaaaagattggtata |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8436764 |
aaaccaaccatcaacgatactacagtactaaagctgataaatttattttgtttgaacacaatgaactgggaaccatactataagtgaaaagattggtata |
8436863 |
T |
|
| Q |
591 |
aataacacaaaccagctttcaggcaaattttataccaaagatctattcacctacagtgcagtactcgccattatgacattcactccacaactcatgaaaa |
690 |
Q |
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||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
8436864 |
aataacataaaccagctttgaggcaagttttaaaccaaagatctattcacctacagtgcagtcctcgccattatgacattcactccacaactcatggaaa |
8436963 |
T |
|
| Q |
691 |
atataacatagcatgtacaaagct |
714 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
8436964 |
atataatatagcatgtacaaagct |
8436987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 8436007 - 8436175
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8436007 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatca |
8436106 |
T |
|
| Q |
118 |
aaaggaaggtttcagcttctgaatcgtagattatagcatgctttctttgttcattacaggaaaaattgt |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
8436107 |
aaaggaaggtttcagcttctgaatcgtagattatagcatgctttctttgttcattacagaaaaaattgt |
8436175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 8395970 - 8396084
Alignment:
| Q |
26 |
attaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatcaaaaggaag |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||| ||| | |||||||| ||| |||||| |||| | |||||||| ||||| || ||||| |
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| T |
8395970 |
attaaaattgggcaagagcaatgtatttctttacacattgaaaaacg-caaagtgcatttcgatgttcaacaatggaaaaattttgacaccataaggatt |
8396068 |
T |
|
| Q |
126 |
gtttcagcttctgaat |
141 |
Q |
| |
|
|||||||||||||||| |
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| T |
8396069 |
gtttcagcttctgaat |
8396084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 8410069 - 8410183
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatca |
117 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| | ||||||||| ||| ||||| |||| |||||||||| | ||||||||||||||||| |
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|
| T |
8410069 |
acatgatgattaaaattgggcaagagcagtgtatttctttgtacattgacaaa--acacagtgcattta-atgtttaacagtggaaaaattgtgacatca |
8410165 |
T |
|
| Q |
118 |
aaaggaaggtttcagctt |
135 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
8410166 |
taaggatagtttcagctt |
8410183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 623
Target Start/End: Original strand, 8447323 - 8447462
Alignment:
| Q |
484 |
ttttaaagaaccaaccatcaacgatactacagtactaaagctgataaatttat-tttgttttaacacaatgaactgagaaccatactataagtgaaaaga |
582 |
Q |
| |
|
||||| |||||||||||||||| | ||| |||||||| || |||||||||||| ||| | ||||| ||||||||| |||||||||||||||||| | |
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|
| T |
8447323 |
ttttatagaaccaaccatcaacaacactgcagtactacagttgataaatttatattttgtataacaaaatgaactgggaaccatactataagtgacatcg |
8447422 |
T |
|
| Q |
583 |
ttggtataaataacacaaaccagctttcaggcaaattttat |
623 |
Q |
| |
|
|| | ||||| |||| |||||||||| ||||| |||||||| |
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| T |
8447423 |
ttaggataaa-aacaaaaaccagcttccaggccaattttat |
8447462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 8417390 - 8417477
Alignment:
| Q |
26 |
attaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgac |
113 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||| || ||||||||| ||||||||| ||||||||||||||| | |||||||||||| |
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| T |
8417390 |
attaaatttgggcaagagcaatgtattttttttcacattgacaaaacacaaagtgcatttagatgtttaacactgaaaaaattgtgac |
8417477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 8442907 - 8443030
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatca |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| || | ||||||||| ||||||||| ||||||||||||||| | |||||| |||||||||| |
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|
| T |
8442907 |
acatgatacttaaaattgggcaagagcaatgtattcctatgtgcattgacaaaacacaaagtgcatttagatgtttaacactggaaaaactgtgacatca |
8443006 |
T |
|
| Q |
118 |
aaaggaaggtttcagcttctgaat |
141 |
Q |
| |
|
|| || |||||||||| ||||| |
|
|
| T |
8443007 |
taaagatagtttcagcttttgaat |
8443030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 8444479 - 8444545
Alignment:
| Q |
75 |
aaagtgcgtttagatgtttaacatttgaaaaattgtgacatcaaaaggaaggtttcagcttctgaat |
141 |
Q |
| |
|
||||||| |||||||||| |||| | |||||||||||||| || ||||| ||||||||||||||||| |
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|
| T |
8444479 |
aaagtgcatttagatgttcaacactcgaaaaattgtgacaccataaggatggtttcagcttctgaat |
8444545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 8350551 - 8350600
Alignment:
| Q |
317 |
ttctcttcgtatgtgtcggtatggtcagacatagttcaactttttctaac |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8350551 |
ttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaac |
8350600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 8480325 - 8480260
Alignment:
| Q |
368 |
aaggaggtccttttgttggtaacaatagcttaat-catcaaccaggaacttggattaaaatttaat |
432 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||| || ||| |||||||||| |
|
|
| T |
8480325 |
aaggaggtccttttgttggtaacagcagcttaatgcatcaaccaagaaattcgatgaaaatttaat |
8480260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 69020 - 68897
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaattgtgacatca |
117 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| || | ||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
69020 |
acatgatacttaaaattgggcaagagcaatgtattcctatgtgcattgacaaaacacaaagtgcatttagatgtttaacactggaaaaattgtgacatca |
68921 |
T |
|
| Q |
118 |
aaaggaaggtttcagcttctgaat |
141 |
Q |
| |
|
|| || |||||||||| ||||| |
|
|
| T |
68920 |
taaagatagtttcagcttttgaat |
68897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 75351 - 75307
Alignment:
| Q |
142 |
cgtagattatagcatgctttctttgttcattacaggaaaaattgt |
186 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
75351 |
cgtagatcatagcatgctttctttgttcattacaggaaaaattgt |
75307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 61867 - 61819
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattga |
66 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
61867 |
acatgataattaaaattgggcaagagcaatgtatttctttacacattga |
61819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 89 - 1
Alignment:
| Q |
18 |
acatgatcattaaaattgggcaagaccaatgtatttctttccatattgacaaaggacaaagtgcgtttagatgtttaacatttgaaaaa |
106 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| || | ||||||||| ||||||||| ||||||||||||||| | |||||| |
|
|
| T |
89 |
acatgatacttaaaattgggcaagagcaatgtattcctatgtgcattgacaaaacacaaagtgcatttagatgtttaacactggaaaaa |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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