View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_12 (Length: 298)
Name: NF8026_low_12
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_12 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 32175434 - 32175145
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
108 |
Q |
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| T |
32175434 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
32175335 |
T |
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| Q |
109 |
gccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagctaaac |
208 |
Q |
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| T |
32175334 |
gccgagtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagctaaac |
32175235 |
T |
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| Q |
209 |
aaattaaacaaggaaacacggcaatcaagattcactcaattgaatatgatgactatgatggaaccattcgttggaatcaggaacctgtta |
298 |
Q |
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| T |
32175234 |
aaattaaacaaggaaacacggcaatcaagattcactcaattgaatatgatgactatgatggaaccattcgttggaatcaggaacctgtta |
32175145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 32183455 - 32183205
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
108 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
32183455 |
tgaagaagtgagtgatgttttcgaaggtattagtgtaaagtggaaactaatttgcatagaagtggactcttcgcggattcgaagttacgatgatgactcc |
32183356 |
T |
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| Q |
109 |
---gccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
205 |
Q |
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| T |
32183355 |
tcggctgtgtcagaaataagatcctatgagctgacttttcacaagaagcacaaagacaagatcattgattcatatttgccttatgtgatggagatagcta |
32183256 |
T |
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| Q |
206 |
aacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatg |
256 |
Q |
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| T |
32183255 |
aacaaattaaacaaggagacatggcaaacaagattcactcaaatgaatatg |
32183205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 32119791 - 32119528
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagtta---tgataatgac |
105 |
Q |
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| T |
32119791 |
tgaagaagtgagtgatgtttttgaaggtattagtgtaaagtggaaactaatttgcatacaggtagacaagtcgcggattcgaagttacagtgatgactcc |
32119692 |
T |
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| Q |
106 |
tcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
205 |
Q |
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| T |
32119691 |
tcagccgtgtcagaaataagatcctatgagctaacttttcacaagaaacacaagaacaagattttcgattcatatttgccttatgtgattgagatagcta |
32119592 |
T |
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| Q |
206 |
aacaaattaaacaaggaaacacggcaatcaagattcactca---attgaatatgatgactatga |
266 |
Q |
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| T |
32119591 |
atcaaatgaaacaaggaaacatggcaatcaagattcgctcaaataatgaatatgatgactatga |
32119528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 32159154 - 32158905
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatga---c |
105 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| ||||| || | ||| || ||| |||||||| | |
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| T |
32159154 |
tgaagaagtgagtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactcatcaagaattagacattacgataatgactcc |
32159055 |
T |
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| Q |
106 |
tcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
205 |
Q |
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||| ||||||||||| ||||||| |||||||||| ||||||||| || ||||| ||||||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
32159054 |
tcacccgtgtcagaaataagatcctatgagctaacttttcacaagaagcacaagaacaagatcttcgattcatatttgccttatgtgatggagatagcta |
32158955 |
T |
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| Q |
206 |
aacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatat |
255 |
Q |
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| T |
32158954 |
aacagattaaacaaggagacatggcaatcaagatttactcaaatgaatat |
32158905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 32111748 - 32111531
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgactca |
108 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| || | ||||| || ||||| | ||| |
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| T |
32111748 |
tgaagaagtgagtgatgtttttgaaggtgttagtgtaaagtggaaactaatatgcatacaagtcgactcatcaagagttcgacattttgataggggctcc |
32111649 |
T |
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| Q |
109 |
--gcc-gtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagcta |
205 |
Q |
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||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32111648 |
tcgcctgtgtcagaaataagatcatatgagctaacttttcacaagaaacacaaaaacaagatcattgattcatatttgccttatgtgatggagatagcta |
32111549 |
T |
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| Q |
206 |
aacaaattaaacaaggaa |
223 |
Q |
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| T |
32111548 |
aacaaattaaacaaggaa |
32111531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 32205404 - 32205655
Alignment:
| Q |
8 |
gtgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgata---atga |
104 |
Q |
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|||||||||||||||||| ||||| |||| |||| |||||||||||| |||| |||||||||| || || || |||||| | |||||| | | |
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| T |
32205404 |
gtgaagaagtgagtgatgattttgaaggtattagagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacgc |
32205503 |
T |
|
| Q |
105 |
ctcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagct |
204 |
Q |
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|||| || |||||||| | ||||| ||||| |||| ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |
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| T |
32205504 |
ctcatccatgtcagaaattagatcctatgaactaacttttcacaagaaacacaagaacaagatcatcgattcatatttgccttatgtgatggagatggct |
32205603 |
T |
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| Q |
205 |
aaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaatatg |
256 |
Q |
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| T |
32205604 |
aaacaaattaaagaagcaaacatggctatcaagattcactcaaatgactatg |
32205655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 32211125 - 32211372
Alignment:
| Q |
8 |
gtgaagaagtgagtgatgtttttggaggtgttagtgtaaagtggaaactaatttgcatacaagtggactcttcgcggattcgaagttatgataatgac-- |
105 |
Q |
| |
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|||||||||||||||||| ||||| |||| ||| |||||||||||| |||| |||||||||| || || || |||||| | |||||| || |
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| T |
32211125 |
gtgaagaagtgagtgatgattttgaaggtattacagtaaagtggaaattaatatgcatacaagaagatggatcacgaattcgacataatgatatgtacac |
32211224 |
T |
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| Q |
106 |
-tcagccgtgtcagaattaagatcatatgagctaagttttcacaataaacacaaaaacaagatcattgattcatattttccttatgtgatggagatagct |
204 |
Q |
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||| ||||||||||| | ||||| ||||| |||| ||||||||| |||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| |
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| T |
32211225 |
ctcatccgtgtcagaaattagatcctatgaactaacttttcacaagaaacacaagaacacgatcttcgattcatatttcccttatgtgatggagatagct |
32211324 |
T |
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| Q |
205 |
aaacaaattaaacaaggaaacacggcaatcaagattcactcaattgaa |
252 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||| ||||| |||| |
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| T |
32211325 |
aaacaaattaaacaaggaaacatggctatcaagattctctcaactgaa |
32211372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 32178564 - 32178495
Alignment:
| Q |
9 |
tgaagaagtgagtgatgtttttgga-ggtgttagtgtaaagtggaaactaatttgcatacaagtggactc |
77 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
32178564 |
tgaagaagtgagtgatgttttttgaaggtgttagtgtaaagtggaaactaatatgtatacaagtcgactc |
32178495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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