View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_13 (Length: 295)
Name: NF8026_low_13
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_13 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 32174732 - 32175026
Alignment:
| Q |
1 |
acccaaatattaatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtg |
100 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174732 |
acccaaagattaatgatatatttgaagaaaaatatataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtg |
32174831 |
T |
|
| Q |
101 |
caatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcat |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32174832 |
caatcaatatcctctatcactagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcat |
32174931 |
T |
|
| Q |
201 |
agatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32174932 |
agatatcatacttgagatagttagccatggcagcaatcaagctagactttccagtacaaggtggaccaaacaacaagtaaccgcgtttccaagct |
32175026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 32182774 - 32183065
Alignment:
| Q |
4 |
caaatattaatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaa |
103 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| |
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| T |
32182774 |
caaatattaatggtatatttgaagaaaaatatataccttattgtctccattattaacaacttctttctcttcttctcggttctgcaaatttatagtgcaa |
32182873 |
T |
|
| Q |
104 |
tcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcataga |
203 |
Q |
| |
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||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
32182874 |
tcaatatcctctatcacaagtatagcacggttggacatgctgagaataagttgcttcaaggtcttattatcccctacatcggtgagatccaagtcataga |
32182973 |
T |
|
| Q |
204 |
tatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32182974 |
tatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgtttccaagct |
32183065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 295
Target Start/End: Complemental strand, 32206057 - 32205798
Alignment:
| Q |
36 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
32206057 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggtt |
32205958 |
T |
|
| Q |
136 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
235 |
Q |
| |
|
|| || |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
32205957 |
ggacataccaagaataagctgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatggctgca |
32205858 |
T |
|
| Q |
236 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
32205857 |
atcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagct |
32205798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 65 - 295
Target Start/End: Original strand, 32119147 - 32119377
Alignment:
| Q |
65 |
tctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagc |
164 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32119147 |
tctttctcttcttctcggttctgcaaatttatattgcaatcaatatcctctatcacaagtatagaacgattgggaatgtcaagaataagttgcttcaagc |
32119246 |
T |
|
| Q |
165 |
gcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtgg |
264 |
Q |
| |
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||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
32119247 |
tcttattatcctctacattagtgagatccaagtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagg |
32119346 |
T |
|
| Q |
265 |
accaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
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| T |
32119347 |
accgtacaacaagtaaccgcgtttccaagct |
32119377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 32158508 - 32158767
Alignment:
| Q |
36 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
135 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
32158508 |
ataccttattgtatccattatcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacgatt |
32158607 |
T |
|
| Q |
136 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
235 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
32158608 |
ggacatgtcaagaataagttgcttcaagcgcttattatcttgtacattagtgagatctaaatcatagatatcatagttgagatagttagccatggctgca |
32158707 |
T |
|
| Q |
236 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
|
||||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
32158708 |
atcaaactagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagct |
32158767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 32157055 - 32157349
Alignment:
| Q |
4 |
caaatattaatgatatatttgaagaatgatatataccttat---tgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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|
| T |
32157055 |
caaagattaatgatatatttgaagaaaaatatacaccttatcattgtctccattatcaacagcttctttctcttcttctcggttctgcaaatttatagtg |
32157154 |
T |
|
| Q |
101 |
caatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||| ||| ||||| ||||||||||||| ||||||||| | |||||| |||||||||||||||| |
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| T |
32157155 |
caatcaatatcctctatcacaagtatcgcacggttggacatgctgagaattagttgcttcaagctcttattatcctctacatctgtgagatccaagtcat |
32157254 |
T |
|
| Q |
201 |
agatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
32157255 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagct |
32157349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 32211808 - 32211519
Alignment:
| Q |
12 |
aatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttat------cttcttctcggttctgcaaatttatagtgcaatc |
105 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||| || |||||||||||||||||| || ||||||||||| |
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|
| T |
32211808 |
aatgatatatttaaagaaaaatacataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatc |
32211709 |
T |
|
| Q |
106 |
aatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagata |
205 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| || ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
32211708 |
aatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtcaaagata |
32211609 |
T |
|
| Q |
206 |
tcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
32211608 |
tcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgttgccaagct |
32211519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 36 - 295
Target Start/End: Original strand, 32111096 - 32111355
Alignment:
| Q |
36 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
135 |
Q |
| |
|
|||| ||||||| ||||||| ||| || |||| ||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||| || |
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|
| T |
32111096 |
atacattattgtggccattatgaacaacttcttcatcttcttctcggttttgcaattttacggagcaatcaatatcctctatcacaagtatagaacggtt |
32111195 |
T |
|
| Q |
136 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
235 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
32111196 |
ggacatgctgagaataagttgcttcaagctcttattatcccctacattagtgagatccaagtcatagatatcatagttgagatagttagccatggctgca |
32111295 |
T |
|
| Q |
236 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagct |
295 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
32111296 |
atcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagct |
32111355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 32534305 - 32534448
Alignment:
| Q |
36 |
ataccttattgtatccattatcaaccacgtctttat------cttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtataga |
129 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || |||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
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|
| T |
32534305 |
ataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaagtataga |
32534404 |
T |
|
| Q |
130 |
acgcttgggaatgtcaagaataagttgcttcaagcgcttattat |
173 |
Q |
| |
|
||| |||| ||| |||||||||||| | || ||| |||||||| |
|
|
| T |
32534405 |
acggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 8043902 - 8043829
Alignment:
| Q |
221 |
ttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagc |
294 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||| || || |||||| ||||||| ||||| ||||||||||| |
|
|
| T |
8043902 |
ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc |
8043829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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