View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8026_low_2 (Length: 508)
Name: NF8026_low_2
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 10280767 - 10280292
Alignment:
| Q |
18 |
acatcgtcgttatgaacatattccctttcgtcattactcgtcttaaaaactcaacaaagaactataaaaaatt-atacggcaatccgaatacgaagatgt |
116 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
10280767 |
acatcgttgttttgaacatattccctttcgtcattactcatcttaaaaactcaacaaagaactataaaaaatttatacggcaattcgaacacgaagatgt |
10280668 |
T |
|
| Q |
117 |
tgttatgaacttggatcaaactcataacaacatcttagaacacactccctttcatcatcatatatatcataaattcaagatagattttttcttccaaacc |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| || | |||||| ||||||||||||||||||||||||| |
|
|
| T |
10280667 |
tgttatgaatttggatcaaactcataacaacatcttagaacacattctctttcatcatcatacatgttataaatacaagatagattttttcttccaaacc |
10280568 |
T |
|
| Q |
217 |
aagtttcttt-tgcacaaaagtcaatattcaatcaaatcacttgagttctttacctatcacaccaaccagatgttggtctagtaacttgagtttaattca |
315 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10280567 |
aagtttctttatgcacaaaagtcaatattcaatcaaatcacttgagttctttacctatcacaccaaccagatgttggtccagtaacttgagtttaattca |
10280468 |
T |
|
| Q |
316 |
ttactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatcattaaatagaaatttcagttcaattcaactacataactggctgaatat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10280467 |
ttactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatcattaaatagaaatttcagttcaattcaactacataactggccgaatat |
10280368 |
T |
|
| Q |
416 |
tctaatcaataatctcagcacacatcacatcacacaacattagagtacataattattctcaaataaataacataac |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10280367 |
tctaatcaataatctcagcacacatcacatcacacaacattagagtacataattattctcaaataaataacataac |
10280292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 34286859 - 34286785
Alignment:
| Q |
18 |
acatcgtcgttatgaacatattccctttcgtcattactcgtcttaaaaactcaacaaagaactataaaaaattat |
92 |
Q |
| |
|
||||||| |||||||||| |||| ||||| |||| |||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
34286859 |
acatcgttgttatgaacacattctctttcatcatcactcatcttaaaaactcaacaaagaactgtgaaaaattat |
34286785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 32576327 - 32576396
Alignment:
| Q |
21 |
tcgtcgttatgaacatattccctttcgtcattactcgtcttaaaaactcaacaaagaactataaaaaatt |
90 |
Q |
| |
|
|||| |||||||||| |||| ||||| ||| ||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
32576327 |
tcgttgttatgaacacattctctttcatcactactcatcttaaaaactcaacaaagaaccatgaaaaatt |
32576396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 18866095 - 18866014
Alignment:
| Q |
42 |
ctttcgtcattactcgtcttaaaaactcaacaaagaactataaaaaattatacggca-atccgaatacgaagatgttgttat |
122 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||| | |||||||||||| || |||| || | |||||||||||||| |
|
|
| T |
18866095 |
ctttcatcatcactcatcttaaaaactcaacaaagaactgtgaaaaattatacgtcagatccaaacaagaagatgttgttat |
18866014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13565812 - 13565752
Alignment:
| Q |
18 |
acatcgtcgttatgaacatattccctttcgtcattactcgtcttaaaaactcaacaaagaa |
78 |
Q |
| |
|
||||||| |||||||||| ||| ||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
13565812 |
acatcgttgttatgaacaccttctctttcatcactgctcgtcttaaaaactcaacaaagaa |
13565752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 25880041 - 25879960
Alignment:
| Q |
18 |
acatcgtcgttatgaacatattccctttcgtcattactcgtcttaaaaactcaacaaagaactataaaaaattatacggcaa |
99 |
Q |
| |
|
||||||| |||||||||| ||||| || |||| |||| ||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
25880041 |
acatcgttgttatgaacactttcccatttatcatcactcatcttaaaaactcaacaaagaattgcgaaaaattatgcggcaa |
25879960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University