View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8026_low_3 (Length: 461)
Name: NF8026_low_3
Description: NF8026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8026_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 12739674 - 12739226
Alignment:
| Q |
1 |
aattgtactttaaaggtaattgattgatgtgctaaagttattttttaaaataatatgaaaatatgtttnnnnnnn--tatgacaatagacattacttaaa |
98 |
Q |
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| T |
12739674 |
aattgtactttaaaggtaattgattgatgtgctaaagttattttttaaaataatatgaaaatatctttaagaaaaaatatgacaatagacattacttaaa |
12739575 |
T |
|
| Q |
99 |
attgtaagtaattaattgattaattgtgtggttaaaattgcagtgtatattatattattacccgtgggttgctttttaaaaagtatagaagtgtacgaga |
198 |
Q |
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| T |
12739574 |
attgtaagtaattaattgattaattgtgtggttaaaattgcagtgtatattattttattacccgtgggttgctttttaaaaagtatagaagtgtatgaga |
12739475 |
T |
|
| Q |
199 |
ttttgcaaacttatatagagtattctctaacaataaatttatttttcaaaacannnnnnncttcatattgtttataccatattaatgccattttgaaggt |
298 |
Q |
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| T |
12739474 |
ttttgcaaatttatatagagtattctctaacaataaatttatttttcaaaacatttttttcttcatattgtttataccatattaatgccattttgtaggt |
12739375 |
T |
|
| Q |
299 |
ttaatcgcacgtatactgaat----tatggttcttgagcttaggcgtaaacatgaagttaagatatcatcattcaagaataaagatatggcaatggcaat |
394 |
Q |
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||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12739374 |
ttaattgcaggtatactgaattatgtatggttcttgagattaggcgtaaacatgaagttaagatatcatcattcaagaataatgatatggcaatggcaat |
12739275 |
T |
|
| Q |
395 |
aaattttataagaaaaattgtgaaaatattttgagtaaaaaaccgctat |
443 |
Q |
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| T |
12739274 |
aaattttattagaaaaattgtgaaaatattttgagtaaaaagccgctat |
12739226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 282943 - 282507
Alignment:
| Q |
9 |
tttaaaggtaattgattgatgtgctaaagttattttttaaaataatatgaaaatatgtttnnnnnnn-tatgacaatagacattacttaaaattgtaagt |
107 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
282943 |
tttaaaagtaattgattgatgtggtaaagttattttttaaaataatatgaaaatatctttaaaaaaaatatgacaatagacattacttaaaattgtaagt |
282844 |
T |
|
| Q |
108 |
aattaattgattaattgtgtggttaaaattgcagtgtatattatattattacccgtgggttgctttttaaaaagtatagaagtgtacgagattttgcaaa |
207 |
Q |
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| T |
282843 |
aattaattgattaattgtgtggttaaaattgtagtgtatattattttattacccatgggttgctttttaaaaagtataaaagtgtatgagattttgcaaa |
282744 |
T |
|
| Q |
208 |
cttatatagagtattctctaacaataaatttatttttcaaaacannnnnnncttcatattgtttataccatattaatgccattttgaaggtttaatcgca |
307 |
Q |
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| T |
282743 |
cttatatagagtattctctatcaataaatttatttttcaaaacatttttttcttcatattgtttataccatattaatgccattttgtaggtttaatcgca |
282644 |
T |
|
| Q |
308 |
cgtatactgaattatggttcttgagcttaggcgtaaacatgaagttaagatatcatcattcaagaataaagatatggc-aatggcaataaattttataag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
282643 |
ggtatactgaattatggttcttgagcttaggcgtaaacatgaagctaagatatcattattcaagaataaagacatggcaaatggcaataaattttataag |
282544 |
T |
|
| Q |
407 |
aaaaattgtgaaaatattttgagtaaaaaaccgctat |
443 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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|
| T |
282543 |
aaaaattgtgcaaatattttgagtaaaaaaccgctat |
282507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 34930963 - 34930854
Alignment:
| Q |
76 |
tatgacaatagacattacttaaaattgtaagtaattaattgattaattgtgtggttaaaattgcagtgtatattatattattacccgtgggttgcttttt |
175 |
Q |
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||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||| |||||| ||||||||||||| || |
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| T |
34930963 |
tatgacaatagacattattgaaaattgtaactaattaattgattaattatgtggttaaaattgtagtgtatgttattttattatccgtgggttgcttgtt |
34930864 |
T |
|
| Q |
176 |
aaaaagtata |
185 |
Q |
| |
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||||| |||| |
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| T |
34930863 |
aaaaattata |
34930854 |
T |
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Back To:
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